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Report for CCDS48420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48420.1 Public Mus musculus 1 Ntmt2 23 108 98 CCDS HistoryNCBI Gene:240879Re-query CCDS DB by CCDS ID:48420.1Re-query CCDS DB by GeneID:240879See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159679.7 ENSMUSP00000124211.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159679.7Link to Ensembl Protein Viewer:ENSMUSP00000124211.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159679Re-query CCDS DB by Protein ID:ENSMUSP00000124211
Original member Current member NCBI NM_001143956.1 NP_001137428.1 Accepted alive Link to Nucleotide Sequence:NM_001143956.1Link to Protein Sequence:NP_001137428.1Re-query CCDS DB by Nucleotide ID:NM_001143956Re-query CCDS DB by Protein ID:NP_001137428Link to BLAST:NP_001137428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137428.1 283 B2RXM4 283 100% 0 0

Chromosomal Locations for CCDS 48420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163703017 163703288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163704003 163704252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163717083 163717258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163724902 163725055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCCCACCTGGGAGCCCATTTTGCCTTTAGATCCCGTTGGCAGAAGACCGACGACGAACTCTGTCGTC
ATAGCATGTCCTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTACCTCTACCTGCTGGA
AAAAATTCCCCTGGTAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGTGAGATGCAGTTCTATGCC
AGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAATTAT
CCAACCCAGATATCCAAGCCTCTCGTGAATTTCTTAGGAAATTTGTTGGGGGGCCAGGGAGAGCGGGAAC
TGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGC
AGTGTTGAATTGGTGGACATGATGGAATCCTTCCTCCTTGAAGCCCAGAGCTACTTGCAGGTTAACGAGG
ACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTAGGGAGATATGATGTCAT
CTGGATTCAGTGGGTCTCAGGGTACCTGACTGATAAGGACCTTCTTGCATTTCTTTCCCGGTGTCGAGAT
GGCCTGAAAGAAAATGGTGTTATCATACTGAAGGACAATGTGGCACGGGAGGGCTGTATCTTCGACCTGT
CTGACAGCAGTGTGACTCGGGACATGGACATCCTTCGAAGCCTTATTAGGAAGAGTGGACTGGTGGTTCT
GGGCCAGGAGAAACAAGAGGGTTTCCCAGAGCAGTGTGTTCCGGTGTGGATGTTTGCACTGCACAGTGAC
AGGCACTCTTGA

Translation (283 aa):
MAHLGAHFAFRSRWQKTDDELCRHSMSFILHKAIRNDFFQSYLYLLEKIPLVKLYALTSQVIDGEMQFYA
RAKLFYQEVPATEEGMMGNFIELSNPDIQASREFLRKFVGGPGRAGTGCALDCGSGIGRVSKHVLLPVFS
SVELVDMMESFLLEAQSYLQVNEDKVESYHCYSLQEFTPHLGRYDVIWIQWVSGYLTDKDLLAFLSRCRD
GLKENGVIILKDNVAREGCIFDLSDSSVTRDMDILRSLIRKSGLVVLGQEKQEGFPEQCVPVWMFALHSD
RHS


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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