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Report for CCDS48387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48387.1 Public Mus musculus 1 Cfhr4 23 108 98 CCDS HistoryNCBI Gene:214403Re-query CCDS DB by CCDS ID:48387.1Re-query CCDS DB by GeneID:214403See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111986.7 ENSMUSP00000107617.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111986.7Link to Ensembl Protein Viewer:ENSMUSP00000107617.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111986Re-query CCDS DB by Protein ID:ENSMUSP00000107617
Original member Current member NCBI NM_001160304.1 NP_001153776.1 Accepted alive Link to Nucleotide Sequence:NM_001160304.1Link to Protein Sequence:NP_001153776.1Re-query CCDS DB by Nucleotide ID:NM_001160304Re-query CCDS DB by Protein ID:NP_001153776Link to BLAST:NP_001153776.1

Chromosomal Locations for CCDS 48387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139698095 139698291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139701799 139701981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139732303 139732476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139733040 139733249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139733411 139733587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139736798 139736974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139739191 139739370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139739457 139739642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139740415 139740588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139752974 139753150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139754229 139754411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139773930 139774106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139774477 139774671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139781096 139781168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGGGTTCTGCAGCATGTTGCTCTTATCCAATATCCTCCTAACTGCATGGCTTTCCACTGCTAAAGGGG
AAGTGAAATCTTGTGAATTTCCACAATTCAAATATGGACGTCTGTATTATGAAGAGATCCTGAGACCCAA
CTTCCCAGTATCTATAGGAAATAAGTACAGCTATAAGTGTGACAACGGGTTTTCACCACCTTCTGGGATT
TTCTGGGACTACCTTCGTTGCACAGTACAAGGGTGGGAGCCTGAAGTCCCATGCGTCAGGAAATGTGTTT
TCCATTATGTGGAGAATGGACAATCTGCATACTGGGAAAAAATATATGTGCAGGGTCAGTCTTTAAAAGT
CCAGTGTTACAATGGCTATAGTCTTCAAAATGGTCAAGACACAATGACATGTACAGAGAATGGCTGGTCC
CCTCCTCCCAAATGCATCCGTATCAAGACATGTTCAGTATCAGATATAGAAATTGAGAATGGGTTTTTTT
CTGAATCTTTTCGTACATATGCTCTAAATAGAGAAACATCCTATAGATGTAAACAGGGATATGTGACAAA
TACTGGAGAAACATCAGGATCAATAACTTGCCTTCAAAATGGATGGTCACCTCAACCCTCATGCATTAAG
TCTTGTGAAAGACCAGTATTTGAGAATTCTGTAACTAAGAATAATAGTACATGGTTTAAGCTCAATGACA
AATTAGACTATGAATGTCTCATTGGATATGAAAATGAATATAAACATACCAAAGGCTCTATAACGTGTAC
TTATTATGGATGGTCTGATACGCCCTCATGTTATGAAATAGAATGCAGCGTTCCCATTCTAGACCGAAAA
CTAGTCGTTTCTCCCAGAAAAGAAAAATACAGAGTTGGAGATTTGTTGGAATTCTCCTGCCGTTCAGGAC
ACAGAGTTGGGCCAGATTCAGTGCAATGCTACCACTTTGGATGGTCTCCTAGTTTCCCTACATGTAAAGC
AGGTCAAGTAGCATCATGTGCACAACCTCCTGAAATTCCTAATGGGGAAATTAATGGAGCAAAAAGAGTT
GAATACAGCCATGGTGAGGTGGTGGGATATGATTGCAAACCTAGATTCCTACTGAAGGGACCCAATAAAA
TCCAGTGTGTTGATGGGATGTGGACAACCTTGCCTGTATGTGTTGAGGAGGAGAGAACATGTGGAGACAT
TCCTGAACTTGAACATGGCTCTGTCAAGTTTTCTGTCCCTCCCTACCACCATGGAGATTCAGTGGAGTTC
ACTTGTGCAGAAACCTTCACAATGATTGGACTTGGGTCAGTTTTTTGCCTTAGTGGAAAGTGGACCCAGC
TTCCTAAATGTGTTGCAACAGACCAACTGGAGAAGTGTAGAGTGCTGAAGTCAACTGACATAGAAGCAAT
TAAACCAAAAAGAAAAGAATTTCAGCATAACTCCACCATGTATTACAAATGTAGAGACAAGCAGGAGTAT
GAACACTCCATCTGTATCAATGGAAAATGGAATCCTGAACCAAACTGTATAAGGAAAATATCCTGCCCTC
CTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACTGTGAAATACTTGGATGGAGAAAAATTATC
TGTTCTTTGCCAAGACAATTACCTAACTCAGGACCCAGAAGAAATGATGTGCAAAGATGGAAGGTGGCAG
TCATTACCTCACTGCATTGAAAAAATCCCATGTTCCCAGCCCCCTACAATAGAACATGGATCTATTAAAT
TACCCAGAACATCTGAAAAAAGGAGAAAATCCATTGAGTTCAGCAGTCATGAACATGGAACTACATTCAG
CTATGTCTGTGATGATGGTTTCAGGATACCTGAAGAAAATGGGGTAGCCTGCTACATGGGAAAATGGAGC
ACTCCACCTCGCTGTGTTGGACTTCCTTGTGGACCTCCACCTTCAATTCCTCTTGGTACTGTTTCTCTTG
AGCTAGAGAGTTACCAACATGGGGAAGAGGTTACATACCATTGTTCTACAGGCTTTGGAATTGATGGACC
AGCACTTATTAAATGTGAAGGAGGAAAGTGGTCTGACCCACCAAAATGCATAAACTCAAGAGGGAAATGT
GGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGAATATGAACCATTCTCAT
CAGTTGACTATCAGTGCCAGAAGTATTATCTCCTTAAGGGAAAGAAGACAATAACATGTAGAAATGGAAA
GTGGTCTGAGCCACCAACCTGCTTACATGCATGTATAATACCAGAAAACATTATGGAAGCACGCAAAATA
ATTCTTAAATGGAGACACACTAAAAATATTTATTCCCATTCAGGGGAGGATATTGAATTTGAATGTAAAT
ATGGATATCATAAAGCAAGAGGATCACCGCCATTTCGTACAAAGTGCATTAGTGGCACCATCAATTATCC
CATTTGTGAATAA

Translation (820 aa):
MGFCSMLLLSNILLTAWLSTAKGEVKSCEFPQFKYGRLYYEEILRPNFPVSIGNKYSYKCDNGFSPPSGI
FWDYLRCTVQGWEPEVPCVRKCVFHYVENGQSAYWEKIYVQGQSLKVQCYNGYSLQNGQDTMTCTENGWS
PPPKCIRIKTCSVSDIEIENGFFSESFRTYALNRETSYRCKQGYVTNTGETSGSITCLQNGWSPQPSCIK
SCERPVFENSVTKNNSTWFKLNDKLDYECLIGYENEYKHTKGSITCTYYGWSDTPSCYEIECSVPILDRK
LVVSPRKEKYRVGDLLEFSCRSGHRVGPDSVQCYHFGWSPSFPTCKAGQVASCAQPPEIPNGEINGAKRV
EYSHGEVVGYDCKPRFLLKGPNKIQCVDGMWTTLPVCVEEERTCGDIPELEHGSVKFSVPPYHHGDSVEF
TCAETFTMIGLGSVFCLSGKWTQLPKCVATDQLEKCRVLKSTDIEAIKPKRKEFQHNSTMYYKCRDKQEY
EHSICINGKWNPEPNCIRKISCPPPPQIPNTQVIETTVKYLDGEKLSVLCQDNYLTQDPEEMMCKDGRWQ
SLPHCIEKIPCSQPPTIEHGSIKLPRTSEKRRKSIEFSSHEHGTTFSYVCDDGFRIPEENGVACYMGKWS
TPPRCVGLPCGPPPSIPLGTVSLELESYQHGEEVTYHCSTGFGIDGPALIKCEGGKWSDPPKCINSRGKC
GPPPPIDNGDITSLSLPEYEPFSSVDYQCQKYYLLKGKKTITCRNGKWSEPPTCLHACIIPENIMEARKI
ILKWRHTKNIYSHSGEDIEFECKYGYHKARGSPPFRTKCISGTINYPICE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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