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Report for CCDS48344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48344.1 Public Mus musculus 1 Gpr39 23 108 98 CCDS HistoryNCBI Gene:71111Re-query CCDS DB by CCDS ID:48344.1Re-query CCDS DB by GeneID:71111See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027581.6 ENSMUSP00000027581.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027581.6Link to Ensembl Protein Viewer:ENSMUSP00000027581.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027581Re-query CCDS DB by Protein ID:ENSMUSP00000027581
Original member NCBI NM_027677.2 NP_081953.2 Updated not alive Link to Nucleotide Sequence:NM_027677.2Link to Protein Sequence:NP_081953.2Re-query CCDS DB by Nucleotide ID:NM_027677Re-query CCDS DB by Protein ID:NP_081953
Current member NCBI NM_027677.3 NP_081953.2 Accepted alive Link to Nucleotide Sequence:NM_027677.3Link to Protein Sequence:NP_081953.2Re-query CCDS DB by Nucleotide ID:NM_027677Re-query CCDS DB by Protein ID:NP_081953Link to BLAST:NP_081953.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081953.2 456 Q5U431 456 99.7807% 0 1

Chromosomal Locations for CCDS 48344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 125677337 125678192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 125872370 125872884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCTTCATCCAGTGGCTCCAACCACATCTGCTCCCGTGTCATCGATCACAGCCATGTTCCTGAATTTG
AGGTGGCCACTTGGATCAAAATCACCCTCATCTTGGTGTACCTGATCATCTTTGTGGTAGGCATCTTGGG
CAACAGCGTCACCATCAGGGTTACGCAGGTATTGCAGAAGAAGGGCTATTTGCAGAAGGAGGTGACAGAT
CACATGGTCAGTTTGGCTTGTTCAGATATCTTGGTCTTTTTGATTGGCATGCCCATGGAGTTCTACAGCA
TCATTTGGAACCCCCTGACCACACCCAGCTATGCTCTGTCCTGTAAGCTCCACACGTTCCTCTTTGAGAC
GTGCAGCTACGCCACACTGCTGCACGTGCTGACCCTCAGCTTTGAGCGCTACATTGCCATTTGTCATCCC
TTCAAGTATAAAGCAGTGTCTGGACCTCGCCAGGTGAAACTGCTGATTGGCTTTGTATGGGTCACCTCCG
CCCTGGTGGCACTGCCTTTGCTCTTTGCCATGGGTATCGAGTACCCTCTGGTAAACGTACCCACTCACAA
GGGACTCAACTGCAACCTCTCTCGCACCCGCCACCACGATGAACCTGGAAACTCCAATATGTCCATCTGC
ACGAACCTCTCCAACCGTTGGGAGGTCTTCCAGTCCAGCATCTTTGGGGCCTTTGCTGTTTACCTGGTGG
TCCTGGCGTCTGTGGCTTTCATGTGTTGGAATATGATGAAAGTGCTAATGAAGAGCAAGCAGGGCACTCT
TGCAGGGACCGGGCCACAGCTCCAGCTGAGGAAGTCAGAGAGTGAGGAGAGCCGGACAGCAAGAAGACAG
ACCATCATATTCCTGAGACTGATTGTGGTGACGTTGGCCGTGTGTTGGATGCCCAATCAGATCCGACGGA
TCATGGCTGCAGCAAAACCCAAACATGACTGGACCAGAACGTACTTCAGGGCATACATGATCCTCCTGCC
CTTCTCTGATACCTTCTTCTACCTCAGCTCTGTGGTCAACCCTCTCCTCTACAACGTGTCCTCTCAGCAG
TTCCGGAAGGTGTTCTGGCAGGTGCTCTGCTGCCGCCTGACTCTGCAGCATGCCAACCAAGAGAAACGCC
AGCGTGCCCGCTTCATCTCCACCAAGGACAGCACCAGCTCAGCCCGCAGCCCCCTCATCTTCCTAGCCTC
CCGGCGCAGTAACTCTTCCTCCAGGAGAACTAACAAGGTTTTCTTAAGCACTTTTCAGACTGAGGCCAAG
CCTGGAGAGGCTAAGCCCCAGCCCTTGAGTCCTGAGTCACCACAGACTGGCTCAGAGACCAAACCAGCTG
GGTCCACCCCAGAAAATAGTTTACAGGAGCAGGAAGTATGA

Translation (456 aa):
MASSSGSNHICSRVIDHSHVPEFEVATWIKITLILVYLIIFVVGILGNSVTIRVTQVLQKKGYLQKEVTD
HMVSLACSDILVFLIGMPMEFYSIIWNPLTTPSYALSCKLHTFLFETCSYATLLHVLTLSFERYIAICHP
FKYKAVSGPRQVKLLIGFVWVTSALVALPLLFAMGIEYPLVNVPTHKGLNCNLSRTRHHDEPGNSNMSIC
TNLSNRWEVFQSSIFGAFAVYLVVLASVAFMCWNMMKVLMKSKQGTLAGTGPQLQLRKSESEESRTARRQ
TIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRTYFRAYMILLPFSDTFFYLSSVVNPLLYNVSSQQ
FRKVFWQVLCCRLTLQHANQEKRQRARFISTKDSTSSARSPLIFLASRRSNSSSRRTNKVFLSTFQTEAK
PGEAKPQPLSPESPQTGSETKPAGSTPENSLQEQEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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