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Report for CCDS48258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48258.1 Public Mus musculus 1 1700019A02Rik 23 108 98 CCDS HistoryNCBI Gene:69397Re-query CCDS DB by CCDS ID:48258.1Re-query CCDS DB by GeneID:69397See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072235.9 ENSMUSP00000072089.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072235.9Link to Ensembl Protein Viewer:ENSMUSP00000072089.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072235Re-query CCDS DB by Protein ID:ENSMUSP00000072089
Original member Current member NCBI NM_027070.2 NP_081346.1 Accepted alive Link to Nucleotide Sequence:NM_027070.2Link to Protein Sequence:NP_081346.1Re-query CCDS DB by Nucleotide ID:NM_027070Re-query CCDS DB by Protein ID:NP_081346Link to BLAST:NP_081346.1

Chromosomal Locations for CCDS 48258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53158747 53158788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53163226 53163245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53170238 53170260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53170388 53170458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53177770 53177827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53181843 53181895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53182495 53182544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53185215 53185290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53187554 53187601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCTGGAGCAGGCAGCAACGGAGAGACCTTGGCTACCCGGATGGAGATCATAGAGATGAATGACAAGT
TAAGAAACAGGCAAGAAATTGTGAATGGACTGAACATATTTTTGGAAGAAAATGAAGAAGAAGCCTATTT
AGAAGAACTGGAAGAAGAATCCGACATGTTTGAGGAGGAAGAAACTGAAGCTCTGAATGAAGATGGTTCC
AAAGAAGCACACAATAATGTAAGAACATCTCATAAAGTATCCCTCAGGAGTATTGCATCAATGACAGATG
AAGAGAGATTTAATATGAGAATTAAGAAGTTTGGTATTACAAGTAAAGAATTCAGAAAATCACCAGTGGC
TTCTTGCTTTGGACTGCCTCTGTCAACTGGCAAAGAAAATGCTGATATGGAAAAGAAGAGAAGGCGCCTG
GAACGTTTTGGACTCTCATGA

Translation (146 aa):
MAGAGSNGETLATRMEIIEMNDKLRNRQEIVNGLNIFLEENEEEAYLEELEEESDMFEEEETEALNEDGS
KEAHNNVRTSHKVSLRSIASMTDEERFNMRIKKFGITSKEFRKSPVASCFGLPLSTGKENADMEKKRRRL
ERFGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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