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Report for CCDS48254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48254.1 Public Mus musculus 1 Myo1b 23 108 98 CCDS HistoryNCBI Gene:17912Re-query CCDS DB by CCDS ID:48254.1Re-query CCDS DB by GeneID:17912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018561.13 ENSMUSP00000018561.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018561.13Link to Ensembl Protein Viewer:ENSMUSP00000018561.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018561Re-query CCDS DB by Protein ID:ENSMUSP00000018561
Original member NCBI NM_001161817.2 NP_001155289.1 Updated not alive Link to Nucleotide Sequence:NM_001161817.2Link to Protein Sequence:NP_001155289.1Re-query CCDS DB by Nucleotide ID:NM_001161817Re-query CCDS DB by Protein ID:NP_001155289
Current member NCBI NM_001161817.3 NP_001155289.1 Accepted alive Link to Nucleotide Sequence:NM_001161817.3Link to Protein Sequence:NP_001155289.1Re-query CCDS DB by Nucleotide ID:NM_001161817Re-query CCDS DB by Protein ID:NP_001155289Link to BLAST:NP_001155289.1

Chromosomal Locations for CCDS 48254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 51751173 51751296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51755643 51755770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51757105 51757257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51757876 51758008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51760295 51760401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51762492 51762626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51763890 51763964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51766822 51766908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51768650 51768736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51769004 51769090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51770786 51770854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51773233 51773382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51774312 51774405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51776204 51776404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51778321 51778547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51779561 51779761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51781970 51782032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51784437 51784541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51793640 51793705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51794312 51794398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51796999 51797117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51797388 51797535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51799532 51799635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51801184 51801282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51813003 51813066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51820141 51820187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51824097 51824201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51834449 51834543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51863319 51863434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51883083 51883217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3411 nt):
ATGGCCAAAATGGAGGTGAAATCCTCACTTCTGGACAATATGATCGGTGTTGGAGATATGGTTCTTTTAG
AGCCGCTCAATGAGGAGACGTTCATCGACAACCTGAAGAAGCGCTTCGACCACAATGAGATATATACATA
CATTGGGAGCGTGGTTATATCTGTTAACCCCTACCGGTCCTTGCCCATATATTCGCCGGAGAAAGTGGAA
GATTACAGAAATAGAAACTTCTATGAACTGAGCCCTCACATCTTTGCTTTGTCGGATGAAGCATACAGAT
CCCTCCGTGATCAAGATAAAGATCAATGCATTCTCATTACTGGGGAGAGTGGAGCAGGAAAAACAGAGGC
CAGCAAGCTCGTCATGTCCTATGTCGCTGCCGTGTGCGGAAAAGGAGCAGAAGTCAATCAGGTCAAGGAA
CAGCTTCTGCAGTCCAACCCTGTCCTGGAAGCTTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCAT
CTAGATTCGGCAAATACATGGATATTGAATTTGACTTTAAAGGCGATCCGCTGGGAGGAGTGATAAGTAA
CTATCTTTTAGAGAAATCTCGTGTTGTTAAGCAGCCAAGAGGTGAAAGAAACTTCCATGTGTTCTATCAG
CTGCTCTCAGGCGCCTCTGAGGAGCTCCTCTACAAGCTTAAGCTGGAGCGGGATTTCAGCAGATACAACT
ATCTGAGTCTGGACTCTGCTAAAGTTAATGGTGTGGATGATGCTGCCAATTTCAGAACTGTTAGGAATGC
GATGCAGATCGTGGGCTTTCTGGATCATGAGGCCGAGGCTGTCCTGGAGGTAGTGGCAGCCGTTTTGAAA
CTGGGGAACATCGAGTTCAAGCCTGAATCACGAGTGAATGGTTTGGATGAAAGCAAAATCAAAGATAAAA
ATGAGTTAAAAGAAATTTGCGAGTTGACCAGCATCGATCAGGTGGTTTTAGAAAGAGCGTTCAGTTTCCG
AACAGTTGAAGCGAAGCAGGAGAAAGTTTCAACCACGCTGAATGTGGCTCAGGCTTATTATGCCCGTGAT
GCCCTGGCTAAAAACCTCTACAGCCGCTTGTTTTCATGGTTGGTAAATCGTATCAACGAAAGCATTAAGG
CACAAACAAAAGTGAGAAAGAAGGTCATGGGTGTTCTGGACATTTATGGCTTTGAAATATTTGAGGATAA
CAGCTTCGAGCAGTTTATTATTAACTATTGTAATGAAAAGCTTCAACAAATCTTCATCGAACTTACCCTC
AAAGAAGAGCAAGAGGAATATATTCGGGAGGACATAGAATGGACTCACATTGACTACTTCAACAATGCTA
TCATTTGTGACCTAATAGAAAATAACACAAATGGAATCTTGGCCATGCTGGATGAAGAGTGCCTGAGACC
CGGCACTGTTACAGATGAGACCTTCCTGGAAAAGCTGAACCAAGTCTGTGCCACCCACCAGCACTTTGAG
AGCAGGATGAGCAAGTGTTCCCGCTTTCTCAACGACACAACCCTGCCCCACAGCTGCTTCAGAATCCAGC
ATTATGCTGGCAAGGTGCTCTACCAGGTGGAAGGATTTGTTGACAAGAACAATGACCTTCTGTACCGGGA
CCTGTCTCAAGCCATGTGGAAGGCCGGCCACTCCCTCATCAAGTCTCTGTTTCCTGAAGGAAATCCTGCA
AAGGTCAACCTGAAGAGACCTCCCACCGCAGGCTCCCAGTTCAAGGCGTCTGTGGCCACGCTGATGAGAA
ACCTGCAGACCAAGAACCCGAACTACATCAGGTGCATCAAGCCAAATGATAAAAAGGCAGCTCACATTTT
CAATGAGAGTCTCGTATGCCATCAGATCAGGTACCTGGGTCTTTTGGAGAACGTTCGAGTGAGACGGGCA
GGCTATGCCTTCAGGCAGGCCTATGAACCTTGCCTGGAAAGATACAAGATGCTTTGCAAACAAACGTGGC
CTCACTGGAAGGGACCAGCAAGGTCTGGCGTGGAGGTTCTGTTTAATGAGCTAGAGATTCCTGTGGAAGA
GCACTCCTTCGGGAGATCCAAGATATTCATCCGAAACCCACGGACATTATTCCAACTAGAAGACCTAAGG
AAGCAGCGGCTGGAGGACCTGGCCACTCTCATTCAGAAGATTTATCGAGGATGGAAATGCCGTACACATT
TTCTGCTCATGAAAAGAAGCCAAGTTGTGATTGCTGCCTGGTACAGGAGATATGCGCAACAAAAGCGGTA
CCAGCAGATAAAGAGTTCAGCCCTGGTGATTCAGTCGTACATCCGGGGCTGGAAGGCTCGAAAAATCCTG
CGGGAGCTGAAGCATCAGAAGCGCTGTAAGGAGGCAGCCACCACCATCGCGGCGTACTGGCATGGCACCC
AGGCGCGAAGGGAGCTGAGACGGCTGAAGGACGAGGCTAGGAATAAGCACGCTATTGCAGTTATTTGGGC
TTACTGGCTTGGATCGAAGGCACGGAGGGAGTTGAAACGCTTGAAGGAGGAGGCTAGGCGTAAGCATGCA
GTTGCTGTCATTTGGGCTTACTGGCTTGGACTGAAGGTACGCAGGGAATACAGGAAATTCTTTAGAGCAA
ATGCTGGAAAGAAAATCTATGAGTTTACACTTCAAAGAATTGTGCAAAAATACTTGTTGGAAATGAAAAA
TAAAATGCCTTCCTTGTCACCGATAGATAAAAATTGGCCATCAAGACCTTACCTGTTCTTGGATTCGACT
CACAAGGAGCTAAAAAGGATCTTCCACTTGTGGAGGTGTAAAAAATACAGGGATCAATTCACAGACCAGC
AGAAACTTATTTATGAAGAGAAGCTCGAGGCCAGCGAACTCTTCAAAGACAAGAAGGCTTTATATCCTTC
TAGTGTTGGGCAACCATTCCAAGGAGCTTACCTGGAAATCAACAAGAACCCAAAATATAAGAAACTCAAA
GATGCCATTGAAGAGAAGATCATTATTGCTGAGGTTGTGAACAAAATTAATCGGGCTAATGGGAAGAGTA
CATCTCGGATTTTCCTCTTAACAAACAATAACCTTCTCCTTGCTGACCAAAAGTCTGGGCAGATCAAGTC
CGAGGTCCCCCTGGTAGATGTGACCAAGGTTTCCATGAGTTCCCAGAACGATGGTTTCTTTGCAGTGCAC
CTCAAGGAGGGTTCAGAAGCGGCTAGTAAAGGGGACTTTCTCTTCAGCAGTGACCACCTGATTGAAATGG
CAACCAAGCTGTATCGCACGACTCTCAGCCAAACTAAACAGAAGCTCAACATCGAGATTTCCGATGAGTT
CCTGGTACAGTTCAGACAGGACAAAGTATGTGTGAAGTTTATTCAAGGCAACCAGAAAAATGGGAGCGTG
CCAACCTGCAAACGAAAGAACAACAGACTCCTTGAAGTCGCTGTCCCTTAA

Translation (1136 aa):
MAKMEVKSSLLDNMIGVGDMVLLEPLNEETFIDNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKVE
DYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVAAVCGKGAEVNQVKE
QLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISNYLLEKSRVVKQPRGERNFHVFYQ
LLSGASEELLYKLKLERDFSRYNYLSLDSAKVNGVDDAANFRTVRNAMQIVGFLDHEAEAVLEVVAAVLK
LGNIEFKPESRVNGLDESKIKDKNELKEICELTSIDQVVLERAFSFRTVEAKQEKVSTTLNVAQAYYARD
ALAKNLYSRLFSWLVNRINESIKAQTKVRKKVMGVLDIYGFEIFEDNSFEQFIINYCNEKLQQIFIELTL
KEEQEEYIREDIEWTHIDYFNNAIICDLIENNTNGILAMLDEECLRPGTVTDETFLEKLNQVCATHQHFE
SRMSKCSRFLNDTTLPHSCFRIQHYAGKVLYQVEGFVDKNNDLLYRDLSQAMWKAGHSLIKSLFPEGNPA
KVNLKRPPTAGSQFKASVATLMRNLQTKNPNYIRCIKPNDKKAAHIFNESLVCHQIRYLGLLENVRVRRA
GYAFRQAYEPCLERYKMLCKQTWPHWKGPARSGVEVLFNELEIPVEEHSFGRSKIFIRNPRTLFQLEDLR
KQRLEDLATLIQKIYRGWKCRTHFLLMKRSQVVIAAWYRRYAQQKRYQQIKSSALVIQSYIRGWKARKIL
RELKHQKRCKEAATTIAAYWHGTQARRELRRLKDEARNKHAIAVIWAYWLGSKARRELKRLKEEARRKHA
VAVIWAYWLGLKVRREYRKFFRANAGKKIYEFTLQRIVQKYLLEMKNKMPSLSPIDKNWPSRPYLFLDST
HKELKRIFHLWRCKKYRDQFTDQQKLIYEEKLEASELFKDKKALYPSSVGQPFQGAYLEINKNPKYKKLK
DAIEEKIIIAEVVNKINRANGKSTSRIFLLTNNNLLLADQKSGQIKSEVPLVDVTKVSMSSQNDGFFAVH
LKEGSEAASKGDFLFSSDHLIEMATKLYRTTLSQTKQKLNIEISDEFLVQFRQDKVCVKFIQGNQKNGSV
PTCKRKNNRLLEVAVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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