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Report for CCDS48232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48232.1 Public Mus musculus 1 Spata31e5 23 108 98 CCDS HistoryNCBI Gene:210962Re-query CCDS DB by CCDS ID:48232.1Re-query CCDS DB by GeneID:210962See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059937.4 ENSMUSP00000058140.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059937.4Link to Ensembl Protein Viewer:ENSMUSP00000058140.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059937Re-query CCDS DB by Protein ID:ENSMUSP00000058140
Original member Current member NCBI NM_001013750.1 NP_001013772.1 Accepted alive Link to Nucleotide Sequence:NM_001013750.1Link to Protein Sequence:NP_001013772.1Re-query CCDS DB by Nucleotide ID:NM_001013750Re-query CCDS DB by Protein ID:NP_001013772Link to BLAST:NP_001013772.1

Chromosomal Locations for CCDS 48232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28776259 28778784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28780034 28780198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2691 nt):
ATGAATAGCATTATTGACTTATGGAGGATCCCCAGCTCCATGTCTATGGTACTGGACATGACCTTTGCCA
TTATACTTGGAGTGGGGATCTTTTACCTACTAATCCCTTTCCTGAAGGAGTATCCAGAGTCACCACCATC
TGGGAGCAAAACAAACATCCGAAAGGTGGTGAAGATGGGGCAGAGGAAGGCCAGTAAGGAAACTGCTACT
TTAACAGGTTACAGAAACTTCCAAAAGAATGCACAGGATGCCCAGAATGCAATATGGCCTGTGGAAAGCC
CAACTCAGTATCATTTACTGGACTCCTCTCCTCATTCCTCTTGTCATTCTAATAAGAAACTGAAACAACT
TTCCCTCCTTCAGCTGTTTTCTAAACTCAAGGTATTAGAAAACCGCATACAGCAACTTTTAGGAAGTATA
CGTTCTGAGTTCACTGATTCAACTGTGCCTACTGTCTGCAACTCCAGAAAATCCCCAAGCGAAAGTAAAA
CAGTGAGGTTTAGTAGTAAACTTGACAGTGCCCAAGCTCTAGGTTTAGCTAAAGAACCTCCACAGTTTTG
TCAGGACCAGACATTGTCCTACCAACCTGTGCCACCAAGCTTGGTAGGTGTGACAGAGGTTCAGGAACAA
GAAAACCTCCCAAGCTCTATACCAAAACAAACACCTCCTTCTTTTCAGTGTAGGGTCCGTAGAAAAGTCC
TTCGCAACACTGATATAGGGATACAGACATCCCTTCCATACATAAATGAACCAGGTCAACCTGAGCTGAA
TTGGAAATATATTACTGGTTGTGATGTCCAAAAATGCCAAATAGCCTTTGACCAACCCATTGACAACTTG
TCCAAGGGCACCCTGCCCATTAAAGCTATCCAGTCAGTCTTCATCCTTCCTGAGCATTATCAAATAGTCT
ACCATCATGAGGACCCACAGCAGGAAGAGAAGGTAATTAACATGGGAGAACAACAAGAAAAACATGTCAG
ATTCCTCCCATCTGAGGAACAGCCACAGCTTCAGGGAGCTTTCCAAACAAACAGCGGTGGTTATTGCAAG
AACCTGCCTGAACTCAACCAGCCTGCCCAGCCCTCCATCCACAATCCCGAAAAATACAAGTGGAGCAAGA
TGGTGGGGTCCGAACTCACAGGGATGCTCTTAAACAAGGCCAAAACAAAGTTTGGCACACCTAACACCAT
CAAGAAGGTCCTCAGTGTTAGTGTCGAAGACCTGACTCAGGCTTCAAGCAACACCCCTGGGAAGGGTCTG
GAACTTGAAAACCTTCCCATGAAGAGAGACATGCTGTCCACTAAGAACACAACTGAAGACCTTTCCTTCC
TTGATCCAAAGACTCAAATGAAGCTGGAATTGAACAGCATGCAGTTTCCCGAGAAACACAGAATATTGCC
CAGTGTTTCTAAGGCGGAATATTATTCAAAGGCTGCCAGGATCCTGGAAAAATTACATCACCAGGATCCA
GGAGGGACAAGGATAGAAACTGTGCATTCTGCCAGACTGCGACACTCTTTTCCAGAGGTTCAGGAGATCC
AAAGAACCCCTTCACCTGCTGCCAGCCATGGGCCCTCAAAGTCCCATTCAGATCAAGGGGAGAGATATTT
TAATGTTCAGCCAAATGCTTTCTGGTCCCAGGAAAAACCCCAGCAGTGCAGGAGTATTGTAGGAACTGGG
AGAGGCATCCTGAAAGGAAGTACCAGCCCCAAAATGTCGAAACATGCACCATGGAAGATGTCTGAGCATG
TGGTTTCAGGACATCTCAGCTGGAATGCAACAAGACCAGGCCCAGAATACTGTGCCCCCTCTTCACAGGC
CAAGGAAACCTACACATTGAAAGTAAAAGAAAAGACACACGAAGAGAGGCCAGGGATTTTGAAACGTGGA
GGCATAAACTCTTTGAAAGAAGAAAGTCCCCTACCAGTTACTGAACAGACAGGCAAGGTAGTAGATGGAG
TAAACCTTGTCTATGGTAGTACATTTGAATTACAAGCCCTCATTAATGCTCTGGCTCAGAACCTGGAGAA
AAGTGTAGACAACCCATCAAAACTCATCATAGTTCCTGTGACCCAGGTACAAGAGGATAAGACAGAATCA
GTGGAGGCATTCCAGCTAGTTGGCTCTTCTCACTACTCTGAGGTCCTCCATGAACCAAACCATAGCACAC
TAGGAAGTGGAATGAGCAGTAGCCACAGGAGTCCTGAGGAGCACAGTCAACATTTCAAGTACAACAGAAC
TGAACATAAGCTGCACTCAGGCATCAATGCCCAGAGAGCCTCGGAACAAGATCAGATCAAAGTGAAGGGA
GGATTAGGCTTTTTCCAGCTCCCCACTCCCATGGGGAATGACTATCCTTGTAGTTACAGAGGAGATGGTA
ACAAGCAGCAGTCCGGTCTTTCTGACCAGAAATCCAGTGACCCAGGTCAAAGTGGAATAAAAATTGGAAT
GGGAGACTCTCCACATGGAAGCCCCAAGTGGCACAAGCACTCATTCAGATACACAGGAATTATAGACAAA
CAGGAGTCAGTTGTTGACCATAAAGTTTTTGATCCACATCAAAATACAAAGAAAGGAGTGGGCCGTGGTC
CACTAATGATTCCCAAAGATAACCATCCAGTCAAGTACAGGGGAACTGGAGTCCAGGAGCAGTTTGCTCT
TGTTGCCCAGGGAGCCTATGACCGGAGGTAG

Translation (896 aa):
MNSIIDLWRIPSSMSMVLDMTFAIILGVGIFYLLIPFLKEYPESPPSGSKTNIRKVVKMGQRKASKETAT
LTGYRNFQKNAQDAQNAIWPVESPTQYHLLDSSPHSSCHSNKKLKQLSLLQLFSKLKVLENRIQQLLGSI
RSEFTDSTVPTVCNSRKSPSESKTVRFSSKLDSAQALGLAKEPPQFCQDQTLSYQPVPPSLVGVTEVQEQ
ENLPSSIPKQTPPSFQCRVRRKVLRNTDIGIQTSLPYINEPGQPELNWKYITGCDVQKCQIAFDQPIDNL
SKGTLPIKAIQSVFILPEHYQIVYHHEDPQQEEKVINMGEQQEKHVRFLPSEEQPQLQGAFQTNSGGYCK
NLPELNQPAQPSIHNPEKYKWSKMVGSELTGMLLNKAKTKFGTPNTIKKVLSVSVEDLTQASSNTPGKGL
ELENLPMKRDMLSTKNTTEDLSFLDPKTQMKLELNSMQFPEKHRILPSVSKAEYYSKAARILEKLHHQDP
GGTRIETVHSARLRHSFPEVQEIQRTPSPAASHGPSKSHSDQGERYFNVQPNAFWSQEKPQQCRSIVGTG
RGILKGSTSPKMSKHAPWKMSEHVVSGHLSWNATRPGPEYCAPSSQAKETYTLKVKEKTHEERPGILKRG
GINSLKEESPLPVTEQTGKVVDGVNLVYGSTFELQALINALAQNLEKSVDNPSKLIIVPVTQVQEDKTES
VEAFQLVGSSHYSEVLHEPNHSTLGSGMSSSHRSPEEHSQHFKYNRTEHKLHSGINAQRASEQDQIKVKG
GLGFFQLPTPMGNDYPCSYRGDGNKQQSGLSDQKSSDPGQSGIKIGMGDSPHGSPKWHKHSFRYTGIIDK
QESVVDHKVFDPHQNTKKGVGRGPLMIPKDNHPVKYRGTGVQEQFALVAQGAYDRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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