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Report for CCDS48228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48228.1 Public Mus musculus 1 Khdc1c 23 108 98 CCDS HistoryNCBI Gene:433278Re-query CCDS DB by CCDS ID:48228.1Re-query CCDS DB by GeneID:433278See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070223.5 ENSMUSP00000068792.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070223.5Link to Ensembl Protein Viewer:ENSMUSP00000068792.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070223Re-query CCDS DB by Protein ID:ENSMUSP00000068792
Original member Current member NCBI NM_001033904.1 NP_001029076.1 Accepted alive Link to Nucleotide Sequence:NM_001033904.1Link to Protein Sequence:NP_001029076.1Re-query CCDS DB by Nucleotide ID:NM_001033904Re-query CCDS DB by Protein ID:NP_001029076Link to BLAST:NP_001029076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029076.1 166 Q4KL78 166 100% 0 0

Chromosomal Locations for CCDS 48228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21368658 21368757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21368892 21369074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21369510 21369727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGAGTGACCTCCGCAGGAAGGGATGGTGGAATGTGCCTGACTACTTCCACAGCCCACTGGTGTTTGACA
TGGAAGAGGACAAGGAAGACTACATATTTGGCCCTCATGATGAATACCTTCACACCCTGGAGGTCCACAG
CAACACCCTCATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCA
CTTAAGGCAAGGCTGTGGGTGATGGACATGATCAGAAAAGTGGGGAGTAAGAACAATTTGGATCAAATTA
AAGGCAAGATGATGCTACTGCAGATCCGGGATCATCCTCTGAGGGATCGAGACCTGGAGCTTCATCCGGA
ATCAGGGAGCAGTCTTTGGATTACCACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTCGAGG
TTTCCTTTGACAGTTGCTTGGTTGTTTTGTGGTTTTGTGAGAATTCTTGGTATTCATAACTTCGCAGACC
TCCATTGGTAA

Translation (166 aa):
MSDLRRKGWWNVPDYFHSPLVFDMEEDKEDYIFGPHDEYLHTLEVHSNTLIQLERWFTPTGQTRVTVVGP
LKARLWVMDMIRKVGSKNNLDQIKGKMMLLQIRDHPLRDRDLELHPESGSSLWITTMNDTTFVEVPHFSR
FPLTVAWLFCGFVRILGIHNFADLHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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