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Report for CCDS48017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48017.1 Public Homo sapiens 9 SCAI 24 110 108 CCDS HistoryNCBI Gene:286205Re-query CCDS DB by CCDS ID:48017.1Re-query CCDS DB by GeneID:286205See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336505.11 ENSP00000336756.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336505.11Link to Ensembl Protein Viewer:ENSP00000336756.6Re-query CCDS DB by Nucleotide ID:ENST00000336505Re-query CCDS DB by Protein ID:ENSP00000336756
Original member Current member NCBI NM_001144877.3 NP_001138349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144877.3Link to Protein Sequence:NP_001138349.1Re-query CCDS DB by Nucleotide ID:NM_001144877Re-query CCDS DB by Protein ID:NP_001138349Link to BLAST:NP_001138349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138349.1 606 Q8N9R8-1 606 100% 0 0

Chromosomal Locations for CCDS 48017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124952807 124952953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124971370 124971470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124971671 124971844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124976114 124976186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124994934 124995015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124999891 124999990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125001965 125002043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125003114 125003215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125003469 125003570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125018799 125018951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125019107 125019205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125020673 125020769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125026812 125026910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125028392 125028478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125029644 125029739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125055876 125056007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125142633 125142677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125143385 125143437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGTCAGAGGAGCCCGGCAGCCCCAGCAGCCGCGGAGTCGCCTGGCCCCCAGACTGACTGGCACAGTGG
AG
AAACCGCCTCGAAAACGGAGAAGCAGGACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGC
T
GAAGATGATATCCCACAGGGAGAGAGGAAAACAGTTACAGATTTTTGTTATCTTCTGGATAAATCTAAG
CAA
CTGTTCAATGGGTTAAGAGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAA
CT
TTTGATGTTTACACCAAACTCTGGAAGTTCCAGCAGCAGCATCGACAAGTCTTGGATAATCGGTATGG
C
TTGAAGCGCTGGCAAATAGGAGAAATTGCTTCCAAGATTGGGCAGCTATACTATCATTATTACTTACGC
ACA
TCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATT
CT
CAAGTCAATAAAGAGGACAGACCTGAATTGGTAGTTAAGAAGTTACGATATTATGCAAGATTTATAGT
A
GTTTGTCTTCTTCTCAACAAAATGGATGTTGTAAAGGATCTGGTAAAGGAATTGTCAGATGAAATTGAA
GAT
TATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTT
TC
ATTGAGGCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGC
T
GAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGGACAGTTGTCTCTGGCTGACGCACTCATT
ATT
GGTAATTGTAATAATCAGGTTAAGTTCAGTGAACTAACTGTTGACATGTTCCGGATGTTACAAGCTC
TG
GAAAGGGAGCCAATGAATTTAGCTTCCCAGATGAATAAACCAGGAATGCAGGAATCAGCTGACAAGCC
T
ACTAGACGAGAAAACCCCCACAAGTATCTGCTCTACAAACCAACCTTCAGCCAGCTATATACCTTCTTA
GCA
GCGTCTTTTAAGGAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCGGCCACTGGCGTTTTCC
CC
ACAGGTCGTTCTGATAGTGAAGGTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATAT
T
ATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTGCCTTCATCCCGGGGAT
CTC
TATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAGAATT
TC
ACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAGA
T
CAATCTCAGCGAGGTAGCCTCTTCACTCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCT
GGA
TTGTCAAGCATGCGCAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATA
TT
GCCCAGCTACTGACTCATTCACGTTCAATAGATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCT
T
CGCTTGCTCCTCACAAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGGGAAACA
CGA
AATTATCCAGAATCATATCCACAACTGCCAAGGGATGAAACAGTGGAGAATCCTCATCTCCAGAAGC
AC
ATTTTGGAATTAGCATCCATTCTGGATGTTCGAAACGTGTTCTTTGAGAATACCATTGATGACTATTA
A


Translation (606 aa):
MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSK
Q
LFNGL
RDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLR
T
SETSYLNEAFSFYSAIRQRSYYSQVNKED
RPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIE
D
YTHRFNTEDQVEWNLVLQEVAAFIE
ADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALI
I
GNCNNQ
VKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFL
A
ASFK
ELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD
L
YPFTRKPLFIIVDSSNSVAYK
NFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVS
G
LSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSI
DQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRET
R
NYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFENTIDDY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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