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Report for CCDS48012.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48012.2 Public Homo sapiens 9 TTLL11 24 110 108 CCDS HistoryNCBI Gene:158135Re-query CCDS DB by CCDS ID:48012.2Re-query CCDS DB by GeneID:158135See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48012.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321582.11 ENSP00000321346.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321582.11Link to Ensembl Protein Viewer:ENSP00000321346.6Re-query CCDS DB by Nucleotide ID:ENST00000321582Re-query CCDS DB by Protein ID:ENSP00000321346
Original member Current member NCBI NM_001139442.2 NP_001132914.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001139442.2Link to Protein Sequence:NP_001132914.2Re-query CCDS DB by Nucleotide ID:NM_001139442Re-query CCDS DB by Protein ID:NP_001132914Link to BLAST:NP_001132914.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132914.2 710 Q8NHH1-1 710 100% 0 0

Chromosomal Locations for CCDS 48012.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121822587 121822879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121860337 121860443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121870497 121870748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121974009 121974124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121974884 121974979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121989195 121989770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122031723 122031856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122039272 122039368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122092687 122093148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCGGCGGGGCAGCTCCGAGAGCGAGCTGGCGGCCCGGTGGGAGGCGGAGGCGGTGGCTGCGGCCAAAG
CGGCGGCCAAAGCTGAGGCCGAGGCCACAGCGGAGACGGTGGCGGAACAGGTCCGCGTGGACGCGGGCGC
GGCCGGGGAACCGGAGTGCAAGGCAGGGGAGGAGCAGCCCAAGGTCCTGGCCCCGGCCCCGGCGCAGCCC
AGTGCGGCTGAGGAGGGGAACACCCAGGTCCTTCAGCGGCCGCCGCCCACGCTGCCCCCGTCCAAGCCGA
AGCCGGTGCAGGGCCTCTGCCCGCACGGGAAGCCCCGGGACAAGGGCCGAAGCTGCAAGCGGAGCTCGGG
CCACGGTTCCGGCGAGAACGGCTCCCAGCGGCCGGTCACCGTGGACAGCTCCAAGGCCAGGACCTCCCTG
GATGCCCTGAAGATCAGCATCCGCCAGCTCAAGTGGAAGGAGTTCCCATTTGGCCGGCGCTTGCCTTGTG
ACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAGG
CATGACGGAGATGGTGCGTAAAATTACTCTGAGCAGAGCAGTGAGAACCATGCAGAATCTCTTTCCTGAG
GAGTACAACTTCTACCCTCGCTCATGGATTCTGCCTGACGAGTTCCAGCTCTTTGTTGCTCAGGTTCAAA
TGGTGAAAGACGATGACCCCTCCTGGAAGCCCACTTTTATCGTGAAACCTGATGGTGGTTGTCAGGGTGA
TGGAATCTACCTCATTAAAGACCCCAGTGACATCCGCCTGGCAGGGACCCTCCAGAGCAGGCCAGCGGTG
GTCCAGGAGTACATCTGCAAACCTCTCCTTATCGACAAGCTCAAGTTTGATATTCGTCTGTATGTCTTAC
TCAAGTCCTTAGACCCCTTAGAGATTTATATAGCCAAAGACGGACTCTCTAGGTTTTGTACCGAGCCATA
TCAGGAGCCCACCCCCAAAAACCTGCACCGCATCTTTATGCACTTAACCAACTATTCACTGAACATCCAC
AGCGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTA
GACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGT
CATCGCGCTGACTCCAGAGCTCAAAGTCTTCTACCAGTCAGACATCCCCACGGGGAGGCCGGGCCCCACG
TGCTTCCAGATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATG
CAAATCCCAGTATGAGAATCGAACATGAGCACGAACTTTCTCCAGGGGTGTTTGAAAATGTCCCCAGCCT
CGTTGATGAAGAAGTGAAAGTGGCTGTGATCAGAGACACTCTGCGCCTCATGGACCCACTTAAGAAGAAA
AGAGAGAATCAGTCTCAGCAGCTTGAAAAACCATTCGCTGGAAAGGAAGATGCTTTGGACGGCGAGCTGA
CCAGTGCTCCAGACTGCAACGCCAACCCCGAAGCCCACCTGCCTTCCATTTGCCTCAAGCAGGTGTTCCC
CAAGTACGCAAAACAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAATTTGTTTATCCGGTTCCTG
GGCATCAAGGGGACAATGAAGTTGGGGCCAACAGGCTTTCGTACCTTCATAAGGAGCTGCAAACTCAGCA
GCAGCAGCCTGTCCATGGCTGCCGTGGACATCCTCTACATTGACATCACACGGAGGTGGAACTCCATGAC
CCTGGACCAGCGGGACTCAGGGATGTGTCTGCAGGCCTTCGTAGAAGCTTTCTTTTTCCTGGCTCAGAGG
AAGTTCAAGATGCTGCCACTTCATGAGCAGGTGGCCTCACTGATTGACCTTTGCGAGTACCACCTGTCCC
TGCTGGATGAAAAACGCCTGGTGTGTGGCCGGGGCGTCCCGTCGGGGGGCCGGCCCCCACACCGTGGCCC
TCCCCAGGAGCCCTCCCCCTCGGCCCAGCCAGCAGGGGACAACCCCCCACCCCGCACCAGCTGTGCCAAT
AAGCTCTCCCATCCCAGACATACCCTGTCCTGA

Translation (710 aa):
MRRGSSESELAARWEAEAVAAAKAAAKAEAEATAETVAEQVRVDAGAAGEPECKAGEEQPKVLAPAPAQP
SAAEEGNTQVLQRPPPTLPPSKPKPVQGLCPHGKPRDKGRSCKRSSGHGSGENGSQRPVTVDSSKARTSL
DALKISIRQLKWKEFPFGRRLPCDIYWHGVSFHDNDIFSGQVNKFPGMTEMVRKITLSRAVRTMQNLFPE
EYNFYPRSWILPDEFQLFVAQVQMVKDDDPSWKPTFIVKPDGGCQGDGIYLIKDPSDIRLAGTLQSRPAV
VQEYICKPLLIDKLKFDIRLYVLLKSLDPLEIYIAKDGLSRFCTEPYQEPTPKNLHRIFMHLTNYSLNIH
SGNFIHSDSASTGSKRTFSSILCRLSSKGVDIKKVWSDIISVVIKTVIALTPELKVFYQSDIPTGRPGPT
CFQILGFDILLMKNLKPILLEVNANPSMRIEHEHELSPGVFENVPSLVDEEVKVAVIRDTLRLMDPLKKK
RENQSQQLEKPFAGKEDALDGELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDRMANLFIRFL
GIKGTMKLGPTGFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQR
KFKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDNPPPRTSCAN
KLSHPRHTLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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