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Report for CCDS47999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47999.1 Public Homo sapiens 9 FSD1L 24 110 108 CCDS HistoryNCBI Gene:83856Re-query CCDS DB by CCDS ID:47999.1Re-query CCDS DB by GeneID:83856See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47999.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000481272.6 ENSP00000417492.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000481272.6Link to Ensembl Protein Viewer:ENSP00000417492.1Re-query CCDS DB by Nucleotide ID:ENST00000481272Re-query CCDS DB by Protein ID:ENSP00000417492
Original member Current member NCBI NM_001145313.3 NP_001138785.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145313.3Link to Protein Sequence:NP_001138785.1Re-query CCDS DB by Nucleotide ID:NM_001145313Re-query CCDS DB by Protein ID:NP_001138785Link to BLAST:NP_001138785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138785.1 530 Q9BXM9-1 530 100% 0 0

Chromosomal Locations for CCDS 47999.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105448221 105448235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105461520 105461615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105464236 105464331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105468193 105468324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105471904 105472005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105479354 105479376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105484381 105484502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105506399 105506608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105508617 105508715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105512807 105512936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105534493 105534593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105535067 105535318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105539263 105539351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105546358 105546483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGACTCCCAGAAATACTGCTTTAAGGAGAATGAAAACGTTACAGTTGATAAAGCCTGTTTTCTGATCT
CTAACATCACTATTGGACCAGAGTCTATTAACTTGCAGCAGGAAGCTCTACAGAGGATCATTTCAACTCT
GGCAAATAAAAATGATGAAATTCAGAACTTTATTGATACACTACATCATACACTAAAAGGAGTTCAGGAA
AATTCGTCCAACATACTCTCAGAGTTAGATGAAGAATTTGATAGTTTATACTCTATACTGGATGAAGTAA
AAGAAAGTATGATTAACTGTATCAAGCAGGAACAAGCTCGTAAATCCCAAGAGTTACAGAGTCAGATTAG
TCAATGTAATAATGCCCTGGAGAACTCTGAAGAACTATTAGAATTTGCAACAAGGTCATTAGATATAAAG
GAACCTGAAGAATTTTCAAAGGCTGCCAGACAGATCAAGGATAGAGTCACAATGGCTTCAGCCTTTCGCC
TTTCTTTGAAACCAAAGGTCAGTGACAACATGACTCATTTAATGGTGGATTTCTCACAGGAAAGACAGAT
GCTGCAAACTTTGAAGTTTTTGCCAGTCCCCAAAGCTCCAGAGATAGATCCAGTAGAGTGTTTGGTGGCA
GATAACTCTGTAACAGTGGCTTGGAGAATGCCAGAAGAAGATAATAAGATTGACCATTTTATACTGGAAC
ATAGGAAGACTAATTTTGATGGACTTCCACGTGTAAAGGATGAGCGATGCTGGGAGATAATTGATAATAT
TAAGGGTACTGAATATACACTATCAGGCTTAAAATTTGATTCAAAGTATATGAATTTCAGAGTGCGAGCT
TGTAACAAGGCTGTGGCTGGAGAGTATTCTGATCCAGTGACTCTAGAGACCAAAGCACTTAACTTCAATT
TGGATAACTCCTCATCCCATTTGAACCTGAAAGTTGAAGATACATGTGTAGAGTGGGATCCTACTGGAGG
AAAAGGTCAAGAAAGTAAAATTAAAGGAAAAGAGAACAAGGGCAGAAGTGGTACACCATCCCCAAAACGA
ACATCTGTAGGCTCCAGGCCACCAGCAGTAAGAGGCAGTAGAGATCGTTTTACTGGAGAATCATACACAG
TGCTGGGAGACACTGCTATTGAAAGTGGACAACATTATTGGGAGGTCAAGGCCCAGAAGGATTGTAAATC
CTACAGTGTGGGAGTAGCATACAAAACGTTGGGGAAATTTGACCAATTGGGAAAGACAAACACTAGTTGG
TGTATCCATGTCAACAACTGGCTACAAAACACATTTGCAGCAAAGCATAATAATAAAGTCAAAGCTTTGG
ATGTTACTGTTCCTGAAAAAATAGGTGTATTTTGTGATTTTGATGGGGGTCAACTTTCATTCTATGATGC
AAATTCTAAACAGTTGCTATATTCCTTTAAGACAAAATTTACTCAGCCAGTACTACCTGGTTTCATGGTA
TGGTGTGGTGGACTTTCTTTGAGTACTGGGATGCAGGTTCCAAGTGCTGTGAGAACACTTCAGAAAAGTG
AAAATGGAATGACTGGTTCAGCTAGCAGCCTGAACAATGTTGTTACTCAATAG

Translation (530 aa):
MDSQKYCFKENENVTVDKACFLISNITIGPESINLQQEALQRIISTLANKNDEIQNFIDTLHHTLKGVQE
NSSNILSELDEEFDSLYSILDEVKESMINCIKQEQARKSQELQSQISQCNNALENSEELLEFATRSLDIK
EPEEFSKAARQIKDRVTMASAFRLSLKPKVSDNMTHLMVDFSQERQMLQTLKFLPVPKAPEIDPVECLVA
DNSVTVAWRMPEEDNKIDHFILEHRKTNFDGLPRVKDERCWEIIDNIKGTEYTLSGLKFDSKYMNFRVRA
CNKAVAGEYSDPVTLETKALNFNLDNSSSHLNLKVEDTCVEWDPTGGKGQESKIKGKENKGRSGTPSPKR
TSVGSRPPAVRGSRDRFTGESYTVLGDTAIESGQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSW
CIHVNNWLQNTFAAKHNNKVKALDVTVPEKIGVFCDFDGGQLSFYDANSKQLLYSFKTKFTQPVLPGFMV
WCGGLSLSTGMQVPSAVRTLQKSENGMTGSASSLNNVVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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