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Report for CCDS47955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47955.1 Public Homo sapiens 9 IFT74 24 110 108 CCDS HistoryNCBI Gene:80173Re-query CCDS DB by CCDS ID:47955.1Re-query CCDS DB by GeneID:80173See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429045.6 ENSP00000393907.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429045.6Link to Ensembl Protein Viewer:ENSP00000393907.2Re-query CCDS DB by Nucleotide ID:ENST00000429045Re-query CCDS DB by Protein ID:ENSP00000393907
Original member Current member NCBI NM_001099224.3 NP_001092694.1 Accepted alive Link to Nucleotide Sequence:NM_001099224.3Link to Protein Sequence:NP_001092694.1Re-query CCDS DB by Nucleotide ID:NM_001099224Re-query CCDS DB by Protein ID:NP_001092694Link to BLAST:NP_001092694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092694.1 372 Q96LB3-2 372 100% 0 0

Chromosomal Locations for CCDS 47955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26961968 26962087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26978128 26978263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26980571 26980619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26984257 26984355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26984499 26984559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26988669 26988728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26990134 26990195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27009020 27009158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27011906 27011968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27016907 27017050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27018647 27018687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27029025 27029104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27036450 27036514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCAGCAATCACAAATCTTCAGCAGCTCGCCCTGTTTCAAGAGGTGGAGTTGGGTTAACAGGAAGGC
CTCCTTCTGGGATACGACCCCTATCAGGAAATATTCGAGTGGCAACTGCAATGCCACCTGGGACAGCAAG
ACCAGGTTCTCGTGGTTGTCCCATAGGGACTGGTGGAGTTCTGTCTTCTCAAATCAAAGTTGCCCATCGC
CCTGTAACACAACAAGGTTTGACTGGAATGAAAACTGGGACGAAAGGTCCCCAGAGGCAAATTTTAGACA
AATCTTACTATCTTGGGCTTCTTAGAAGTAAAATAAGTGAACTTACAACTGAAGTTAATAAACTTCAGAA
GGGAATAGAAATGTACAATCAAGAGAATTCAGTATATTTGTCATATGAAAAGAGGGCTGAGACTTTAGCT
GTTGAGATAAAAGAGCTTCAAGGACAACTAGCAGACTACAACATGTTGGTAGATAAACTTAATACCAACA
CTGAAATGGAAGAAGTAATGAATGATTACAATATGCTTAAAGCTCAAAATGATCGAGAAACACAAAGTTT
GGATGTCATATTTACTGAAAGACAAGCGAAAGAAAAACAAATCAGAAGTGTCGAAGAAGAAATTGAACAG
GAAAAACAAGCAACAGATGACATTATCAAAAATATGTCTTTTGAAAACCAAGTCAAGTACCTAGAGATGA
AAACCACAAATGAGAAACTGTTACAGGAATTAGATACACTTCAACAACAATTGGATTCACAGAACATGAA
AAAAGAGAGCCTGGAAGCAGAAATAGCTCACTCCCAGGTGAAACAGGAGGCGGTATTGCTGCATGAAAAA
CTTTATGAGTTGGAGTCCCATCGAGATCAAATGATTGCAGAAGACAAAAGCATAGGATCTCCAATGGAAG
AGAGAGAGAAATTACTTAAGCAGATTAAAGATGATAATCAGGAAATAGCCAGCATGGAAAGACAGTTAAC
AGATACAAAAGAAAAGATAAATCAGTTTATTGAAGAAATTAGACAACTTGACATGGATTTAGAGGAACAC
CAAGATCCTACCAACTATGGATGGAAAATACTTGAAAAAAATACAGGAAGTTTCAAAAAGCAAGTTTGA

Translation (372 aa):
MASNHKSSAARPVSRGGVGLTGRPPSGIRPLSGNIRVATAMPPGTARPGSRGCPIGTGGVLSSQIKVAHR
PVTQQGLTGMKTGTKGPQRQILDKSYYLGLLRSKISELTTEVNKLQKGIEMYNQENSVYLSYEKRAETLA
VEIKELQGQLADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQ
EKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEK
LYELESHRDQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEH
QDPTNYGWKILEKNTGSFKKQV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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