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Report for CCDS47913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47913.1 Public Homo sapiens 8 SAMD12 24 110 108 CCDS HistoryNCBI Gene:401474Re-query CCDS DB by CCDS ID:47913.1Re-query CCDS DB by GeneID:401474See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524796.6 ENSP00000435927.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524796.6Link to Ensembl Protein Viewer:ENSP00000435927.2Re-query CCDS DB by Nucleotide ID:ENST00000524796Re-query CCDS DB by Protein ID:ENSP00000435927
Original member Current member NCBI NM_001101676.2 NP_001095146.1 Accepted alive Link to Nucleotide Sequence:NM_001101676.2Link to Protein Sequence:NP_001095146.1Re-query CCDS DB by Nucleotide ID:NM_001101676Re-query CCDS DB by Protein ID:NP_001095146Link to BLAST:NP_001095146.1

Chromosomal Locations for CCDS 47913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 118197710 118197732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118379560 118379700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118439832 118439961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118580715 118580893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118621804 118621816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCTGTGGAAGCTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACCCTGCCCATGCTGAAGGTA
TTAAACTGCAAATTGAAGGTGAAGGTGTGGAATCTCAATCCATTAAAAATAAAAATTTCCAGAAGGTGCC
TGACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCTGAGACGGCTAAGTCAGCTACGGTGAAGCTA
TCTAAACCGGTGGCTCTATGGACCCAGCAGGATGTCTGCAAGTGGTTGAAGAAACATTGTCCGAATCAGT
ATCAGATCTACAGTGAGTCATTCAAACAGCATGACATAACTGGGCGAGCCCTGCTGAGACTTACTGACAA
AAAGCTCGAGCGAATGGGGATTGCCCAGGAGAACCTCCGGCAGCACATCTTACAACAGGTGCTCCAGCTG
AAGGTGCGAGAAGAAGTCAGAAATCTACAGTTACTCACACAAGCATCATCTGAGGGTTCTCCATAA

Translation (161 aa):
MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGVESQSIKNKNFQKVPDQKGTPKRLQAEAETAKSATVKL
SKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERMGIAQENLRQHILQQVLQL
KVREEVRNLQLLTQASSEGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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