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Report for CCDS47855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47855.1 Public Homo sapiens 8 PXDNL 24 110 108 CCDS HistoryNCBI Gene:137902Re-query CCDS DB by CCDS ID:47855.1Re-query CCDS DB by GeneID:137902See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356297.5 ENSP00000348645.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356297.5Link to Ensembl Protein Viewer:ENSP00000348645.4Re-query CCDS DB by Nucleotide ID:ENST00000356297Re-query CCDS DB by Protein ID:ENSP00000348645
Original member Current member NCBI NM_144651.5 NP_653252.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144651.5Link to Protein Sequence:NP_653252.4Re-query CCDS DB by Nucleotide ID:NM_144651Re-query CCDS DB by Protein ID:NP_653252Link to BLAST:NP_653252.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653252.4 1463 A1KZ92-1 1463 100% 0 0

Chromosomal Locations for CCDS 47855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 51319891 51320022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51320784 51320897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51339624 51339753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51345833 51345947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51371873 51372081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51374597 51374731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51408067 51409561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51411250 51411407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51413150 51413258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51423575 51423731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51426646 51426758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51447004 51447162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51449002 51449118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51453519 51453785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51457498 51457667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51472187 51472304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51474972 51475141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51483643 51483714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51499699 51499770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51556840 51556911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51592627 51592698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51654689 51654760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 51809181 51809344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4392 nt):
ATGGAGCCCAGACTGTTCTGCTGGACCACTCTCTTTCTCCTGGCCGGGTGGTGCCTGCCAGGGTTGCCCT
GCCCCAGCCGGTGCCTTTGCTTTAAGAGCACCGTCCGCTGCATGCACTTGATGCTGGACCACATTCCTCA
GGTACCACAGCAGACCACAGTTCTAGACTTGAGGTTTAACAGAATAAGAGAAATTCCAGGGAGCGCCTTC
AAGAAACTCAAGAATTTGAACACACTTCTGCTGAACAACAACCACATCAGAAAGATTTCCAGAAATGCTT
TTGAAGGACTTGAAAATTTGCTATATCTGTACCTGTATAAGAATGAAATCCATGCACTAGATAAGCAAAC
ATTTAAAGGACTCATATCTTTGGAACATCTGTATATTCATTTCAACCAACTAGAAATGCTACAGCCAGAG
ACCTTTGGAGACCTTCTGAGATTAGAGCGACTATTTTTGCATAACAACAAATTATCTAAAATTCCAGCTG
GGAGCTTTTCTAATCTGGATTCATTAAAAAGATTGCGTCTGGATTCCAACGCCCTGGTTTGTGACTGTGA
TCTGATGTGGCTGGGGGAGCTTTTACAAGGCTTTGCCCAACACGGCCACACCCAGGCTGCGGCTACCTGC
GAATATCCCAGGAGACTCCATGGGCGTGCAGTTGCTTCAGTAACAGTAGAGGAATTCAATTGCCAGAGCC
CCCGAATTACTTTTGAGCCGCAGGATGTGGAGGTACCATCAGGAAATACCGTCTACTTCACCTGCCGGGC
GGAAGGAAACCCCAAACCTGAGATTATTTGGATACACAACAACCACTCATTGGATTTGGAAGATGATACT
CGACTTAATGTGTTTGATGATGGCACACTCATGATCCGAAACACCAGAGAGTCAGACCAAGGTGTCTATC
AGTGCATGGCCAGAAATTCCGCTGGGGAAGCCAAGACACAGAGTGCCATGCTCAGATACTCCAGTCTTCC
AGCCAAACCAAGCTTTGTAATCCAGCCTCAGGACACAGAGGTTTTAATTGGCACCAGCACAACTTTGGAA
TGTATGGCCACAGGCCACCCACACCCTCTTATCACTTGGACCAGGGACAATGGATTGGAGCTGGATGGAT
CCAGGCACGTGGCAACGTCCAGTGGACTTTACTTACAGAACATCACACAACGGGATCATGGTCGATTTAC
CTGTCATGCCAACAATAGCCACGGCACTGTTCAAGCTGCAGCAAACATAATTGTACAAGCTCCTCCACAA
TTTACAGTAACCCCCAAGGATCAAGTGGTGCTGGAAGAACATGCTGTAGAGTGGCTCTGTGAAGCTGACG
GCAACCCACCTCCTGTTATTGTCTGGACAAAAACAGGAGGGCAGCTCCCTGTGGAAGGCCAGCATACAGT
TCTCTCCTCTGGCACTTTGAGAATTGACCGTGCAGCACAGCACGATCAAGGCCAATATGAATGTCAAGCA
GTCAGTTCGTTGGGGGTGAAAAAGGTGTCTGTGCAGCTGACTGTAAAACCCAAAGCTCTTGCAGTGTTTA
CTCAACTTCCTCAGGATACAAGTGTCGAGGTTGGAAAGAATATAAACATTTCATGTCATGCTCAAGGAGA
ACCACAGCCCATAATTACTTGGAATAAGGAAGGTGTGCAGATTACTGAGAGTGGTAAATTCCATGTGGAT
GATGAAGGCACGCTGACTATCTACGACGCAGGGTTCCCTGACCAGGGAAGATATGAATGTGTGGCTCGGA
ATTCTTTTGGCCTTGCTGTGACCAACATGTTTCTTACAGTCACGGCTATACAGGGTAGACAAGCTGGCGA
TGACTTTGTTGAATCTTCCATTCTTGATGCTGTACAGAGAGTTGACAGTGCAATTAACTCCACACGAAGA
CATTTGTTTTCACAAAAACCTCACACCTCCAGTGACCTGCTGGCTCAATTTCATTACCCGCGTGACCCAC
TGATTGTGGAAATGGCAAGAGCAGGGGAGATTTTTGAGCACACGCTGCAGCTGATACGGGAACGTGTGAA
GCAGGGGCTCACTGTGGACTTGGAAGGCAAAGAATTCCGGTACAATGACTTGGTGTCCCCGCGCTCCCTC
AGCCTCATCGCCAATTTATCTGGATGCACAGCTCGCAGGCCTCTGCCAAACTGCTCCAACCGGTGTTTCC
ATGCGAAGTACCGCGCCCACGACGGCACGTGCAACAACCTGCAGCAGCCCACGTGGGGCGCGGCGCTGAC
CGCCTTCGCGCGCCTGCTGCAGCCAGCCTACCGGGACGGCATCCGCGCGCCCCGCGGGCTCGGCCTTCCT
GTGGGCTCCCGCCAGCCCCTCCCGCCGCCCCGGCTGGTCGCCACAGTGTGGGCGCGCGCGGCGGCCGTCA
CCCCCGACCACAGCTACACGCGCATGCTCATGCACTGGGGCTGGTTTCTAGAGCACGACTTGGACCACAC
AGTGCCTGCGCTGAGCACAGCCCGCTTCTCGGATGGGCGGCCGTGCAGCTCCGTCTGCACCAACGACCCT
CCTTGTTTCCCCATGAACACCCGGCACGCCGACCCCCGGGGCACCCACGCGCCCTGCATGCTCTTCGCGC
GCTCCAGCCCCGCGTGTGCCAGCGGCCGTCCCTCTGCGACGGTGGATTCAGTCTATGCACGAGAGCAGAT
CAACCAGCAAACAGCCTACATCGATGGCTCCAACGTTTACGGGAGCTCGGAGCGGGAATCCCAGGCTCTC
AGAGACCCTTCGGTGCCTCGGGGTCTCCTGAAGACAGGCTTTCCTTGGCCTCCCTCCGGAAAGCCCTTAT
TGCCCTTTTCTACAGGCCCACCCACCGAGTGCGCGCGACAGGAGCAGGAGAGCCCCTGTTTCCTGGCCGG
GGACCACCGGGCCAACGAGCATCTGGCTCTGGCCGCCATGCACACCCTGTGGTTCCGGGAACACAACAGG
ATGGCCACGGAGCTGTCCGCCCTGAACCCCCACTGGGAGGGAAACACGGTTTACCAGGAAGCCAGGAAGA
TCGTGGGCGCGGAGCTGCAGCACATCACCTACAGCCACTGGCTGCCTAAGGTCCTGGGGGACCCTGGCAC
TAGGATGCTGAGGGGTTACCGAGGCTACAACCCCAACGTGAATGCAGGCATCATTAACTCTTTTGCTACT
GCAGCCTTTAGATTTGGCCACACATTAATCAATCCTATTCTTTACCGACTGAATGCCACCTTAGGTGAAA
TTTCCGAAGGCCACCTTCCGTTCCATAAAGCGCTCTTTTCACCGTCCAGAATAATCAAGGAAGGTGGGAT
AGACCCGGTTCTCCGGGGGCTGTTTGGCGTGGCTGCTAAATGGCGGGCACCCTCCTACCTTCTCAGTCCT
GAGCTGACCCAGAGGCTCTTCTCCGCGGCTTATTCTGCGGCCGTGGATTCGGCTGCCACCATCATTCAAA
GGGGTAGAGACCACGGGATCCCACCATATGTTGACTTCAGAGTTTTCTGTAATTTGACTTCAGTTAAGAA
CTTTGAGGATCTTCAAAATGAAATTAAAGATTCAGAGATTAGACAAAAACTGAGAAAGTTGTACGGCTCT
CCAGGTGACATTGACCTCTGGCCCGCCCTTATGGTTGAAGACCTGATTCCTGGTACAAGAGTGGGACCAA
CACTTATGTGCCTGTTTGTTACCCAGTTTCAGCGGCTAAGAGATGGAGATAGGTTCTGGTATGAAAACCC
TGGAGTATTTACCCCGGCACAACTCACTCAGCTGAAGCAGGCGTCCCTGAGCCGGGTGCTTTGTGACAAT
GGTGACAGCATTCAGCAAGTGCAGGCTGATGTCTTTGTAAAGGCAGAATACCCACAGGATTACCTGAACT
GCAGCGAGATCCCGAAGGTGGACCTGCGAGTGTGGCAAGACTGCTGTGCAGACTGTAGGAGTAGAGGACA
GTTCAGAGCAGTGACGCAAGAGTCTCAAAAGAAACGCTCAGCTCAATACAGCTATCCTGTTGATAAGGAT
ATGGAGTTAAGTCATCTAAGAAGTAGGCAACAAGATAAAATATATGTGGGTGAAGATGCTAGAAATGTGA
CAGTTCTGGCAAAAACAAAGTTCTCCCAAGATTTCAGCACGTTTGCAGCGGAAATTCAGGAAACCATCAC
AGCACTCAGAGAGCAGATAAACAAGCTGGAGGCACGCCTGAGGCAGGCAGGGTGTACAGATGTTAGAGGG
GTTCCAAGGAAGGCCGAGGAGCGCTGGATGAAAGAAGACTGCACTCACTGCATTTGTGAGAGTGGCCAGG
TCACCTGTGTGGTGGAGATTTGTCCCCCGGCTCCCTGTCCCAGTCCTGAATTGGTGAAAGGAACCTGCTG
TCCAGTTTGCAGAGACCGAGGAATGCCAAGTGATTCCCCAGAGAAGCGCTAA

Translation (1463 aa):
MEPRLFCWTTLFLLAGWCLPGLPCPSRCLCFKSTVRCMHLMLDHIPQVPQQTTVLDLRFNRIREIPGSAF
KKLKNLNTLLLNNNHIRKISRNAFEGLENLLYLYLYKNEIHALDKQTFKGLISLEHLYIHFNQLEMLQPE
TFGDLLRLERLFLHNNKLSKIPAGSFSNLDSLKRLRLDSNALVCDCDLMWLGELLQGFAQHGHTQAAATC
EYPRRLHGRAVASVTVEEFNCQSPRITFEPQDVEVPSGNTVYFTCRAEGNPKPEIIWIHNNHSLDLEDDT
RLNVFDDGTLMIRNTRESDQGVYQCMARNSAGEAKTQSAMLRYSSLPAKPSFVIQPQDTEVLIGTSTTLE
CMATGHPHPLITWTRDNGLELDGSRHVATSSGLYLQNITQRDHGRFTCHANNSHGTVQAAANIIVQAPPQ
FTVTPKDQVVLEEHAVEWLCEADGNPPPVIVWTKTGGQLPVEGQHTVLSSGTLRIDRAAQHDQGQYECQA
VSSLGVKKVSVQLTVKPKALAVFTQLPQDTSVEVGKNINISCHAQGEPQPIITWNKEGVQITESGKFHVD
DEGTLTIYDAGFPDQGRYECVARNSFGLAVTNMFLTVTAIQGRQAGDDFVESSILDAVQRVDSAINSTRR
HLFSQKPHTSSDLLAQFHYPRDPLIVEMARAGEIFEHTLQLIRERVKQGLTVDLEGKEFRYNDLVSPRSL
SLIANLSGCTARRPLPNCSNRCFHAKYRAHDGTCNNLQQPTWGAALTAFARLLQPAYRDGIRAPRGLGLP
VGSRQPLPPPRLVATVWARAAAVTPDHSYTRMLMHWGWFLEHDLDHTVPALSTARFSDGRPCSSVCTNDP
PCFPMNTRHADPRGTHAPCMLFARSSPACASGRPSATVDSVYAREQINQQTAYIDGSNVYGSSERESQAL
RDPSVPRGLLKTGFPWPPSGKPLLPFSTGPPTECARQEQESPCFLAGDHRANEHLALAAMHTLWFREHNR
MATELSALNPHWEGNTVYQEARKIVGAELQHITYSHWLPKVLGDPGTRMLRGYRGYNPNVNAGIINSFAT
AAFRFGHTLINPILYRLNATLGEISEGHLPFHKALFSPSRIIKEGGIDPVLRGLFGVAAKWRAPSYLLSP
ELTQRLFSAAYSAAVDSAATIIQRGRDHGIPPYVDFRVFCNLTSVKNFEDLQNEIKDSEIRQKLRKLYGS
PGDIDLWPALMVEDLIPGTRVGPTLMCLFVTQFQRLRDGDRFWYENPGVFTPAQLTQLKQASLSRVLCDN
GDSIQQVQADVFVKAEYPQDYLNCSEIPKVDLRVWQDCCADCRSRGQFRAVTQESQKKRSAQYSYPVDKD
MELSHLRSRQQDKIYVGEDARNVTVLAKTKFSQDFSTFAAEIQETITALREQINKLEARLRQAGCTDVRG
VPRKAEERWMKEDCTHCICESGQVTCVVEICPPAPCPSPELVKGTCCPVCRDRGMPSDSPEKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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