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Report for CCDS47853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47853.1 Public Homo sapiens 8 CLXN 24 110 108 CCDS HistoryNCBI Gene:79645Re-query CCDS DB by CCDS ID:47853.1Re-query CCDS DB by GeneID:79645See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433756.1 ENSP00000400873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433756.1Link to Ensembl Protein Viewer:ENSP00000400873.1Re-query CCDS DB by Nucleotide ID:ENST00000433756Re-query CCDS DB by Protein ID:ENSP00000400873
Original member Current member EBI ENST00000523092.5 ENSP00000430765.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523092.5Link to Ensembl Protein Viewer:ENSP00000430765.1Re-query CCDS DB by Nucleotide ID:ENST00000523092Re-query CCDS DB by Protein ID:ENSP00000430765
Original member Current member NCBI NM_001142857.2 NP_001136329.1 Accepted alive Link to Nucleotide Sequence:NM_001142857.2Link to Protein Sequence:NP_001136329.1Re-query CCDS DB by Nucleotide ID:NM_001142857Re-query CCDS DB by Protein ID:NP_001136329Link to BLAST:NP_001136329.1
Original member Current member NCBI NM_001363973.3 NP_001350902.1 Accepted alive Link to Nucleotide Sequence:NM_001363973.3Link to Protein Sequence:NP_001350902.1Re-query CCDS DB by Nucleotide ID:NM_001363973Re-query CCDS DB by Protein ID:NP_001350902Link to BLAST:NP_001350902.1
Original member Current member NCBI NM_001363974.2 NP_001350903.1 Accepted alive Link to Nucleotide Sequence:NM_001363974.2Link to Protein Sequence:NP_001350903.1Re-query CCDS DB by Nucleotide ID:NM_001363974Re-query CCDS DB by Protein ID:NP_001350903Link to BLAST:NP_001350903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136329.1 159 Q9HAE3-2 159 100% 0 0
NP_001350902.1 159 Q9HAE3-2 159 100% 0 0
NP_001350903.1 159 Q9HAE3-2 159 100% 0 0

Chromosomal Locations for CCDS 47853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 48724742 48724801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48729042 48729146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48729720 48729871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48730540 48730644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48735094 48735151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGAACCGCAAGAAACTGCAGAAGCTGACGGACACCTTAACCAAAAATTGCAAGCATTTATTCCGAGGTT
TTGATAAAGATAATGATGGCTGTGTAAATGTATTGGAGTGGATTCATGGATTATCACTGTTTCTTCGAGG
ATCTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGACGGATTCATTTCAAAG
GAGGAAATGTTTCACATGTTGAAGAACAGCCTTCTCAAACAGCCATCTGAGGAAGACCCTGATGAAGGAA
TTAAAGATTTGGTTGAAATAACACTGAAGAAAATGGATCATGACCATGATGGGAAGCTGTCTTTTGCAGA
CTATGAACTGGCTGTGAGAGAAGAGACTCTTCTACTGGAGGCCTTTGGGCCATGTCTTCCTGATCCAAAG
AGCCAGATGGAATTTGAAGCTCAAGTATTCAAAGATCCAAATGAATTCAATGATATGTGA

Translation (159 aa):
MNRKKLQKLTDTLTKNCKHLFRGFDKDNDGCVNVLEWIHGLSLFLRGSLEEKMKYCFEVFDLNGDGFISK
EEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHDGKLSFADYELAVREETLLLEAFGPCLPDPK
SQMEFEAQVFKDPNEFNDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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