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Report for CCDS47833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47833.1 Public Homo sapiens 8 NUGGC 24 110 108 CCDS HistoryNCBI Gene:389643Re-query CCDS DB by CCDS ID:47833.1Re-query CCDS DB by GeneID:389643See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413272.7 ENSP00000408697.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000413272.7Link to Ensembl Protein Viewer:ENSP00000408697.2Re-query CCDS DB by Nucleotide ID:ENST00000413272Re-query CCDS DB by Protein ID:ENSP00000408697
Original member Current member NCBI NM_001010906.2 NP_001010906.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010906.2Link to Protein Sequence:NP_001010906.1Re-query CCDS DB by Nucleotide ID:NM_001010906Re-query CCDS DB by Protein ID:NP_001010906Link to BLAST:NP_001010906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010906.1 796 Q68CJ6 796 100% 0 0

Chromosomal Locations for CCDS 47833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 28023317 28023462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28026962 28027052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28029266 28029402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28030310 28030418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28031243 28031381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28033540 28033697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28041051 28041215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28045527 28045660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28047507 28047612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28055965 28056054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28058258 28058276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28060426 28060601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28064522 28064731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28067514 28067744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28068216 28068438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28069544 28069652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28070252 28070356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28074368 28074410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGCAGAAACGAAGGATGTTTTTGGCCAGGAACCGCATCCAGTTGAAGATGATTTATATAAAGAACGAA
CGAGAAAAAGAAGGAAATCAGATCGAGACCAGCGGTTCCGAGCATTTCCCTCCATGGAGCAGAGTGCTCT
TAAGGAATATGAAAAATTGGAATCACGGACCAGAAGGGTTTTGAGCAACACTTATCAGAAACTTATTCAG
TCTGTCTTCCTGGATGACAGCATCCCTAATGGAGTCAAGTATCTCATAAATAGGCTTCTTGCCTTGATTG
AAAAGCCGACAGTGGACCCAATCTACATTGCATTATTTGGAAGCACTGGGGCTGGGAAGAGCTCCCTGAT
CAATGCCATCATCCAGCAAGCAATGTTTCTACCAGTGTCTGGAGAAAGCATATGTACTTCCTGCATTGTA
CAAGTGAGCTCTGGCTGCTGTGTGCAGTATGAGGCCAAAATCCACCTTCTGTCTGACCAGGAGTGGAGGG
AGGAGCTGAAGAACCTGACCAAACTCCTGCATAGGACGGAGGAGCTGAGCAGAGAAGAGGCAGATGCGTG
GAACAGGGATGAGGCAGTGGAGGAAGCCACCTGGAAGCTACAAATGATTTATGGAAATGGGGCAGAGAGT
AAGAACTATGAGGAGTTACTGAGGGCGAAGCCCAAAAGGAAGATCCCCACCTCCAGAGTCATCACCCTCA
AGGCGGAAGAGGCAGAAGAGCTGTCCATCAAGCTGGACCCCTACATCCGCACACAGAGGAGAGATTGGGA
TGGAGAGGCCGCTGAGATGCGCATCTGGCCCTTGATCAAACATGTGGAAGTGACACTTCCCAAATCCGAC
CTGATCCCAGAAGGGGTCGTGCTGGTGGACATCCCAGGCACAGGCGACTTCAACAGCAAGAGGGACGAGA
TGTGGAAAAAGACCATTGACAAGTGCTCAGTGATCTGGGTGATCAGCGACATAGAGCGAGTTTCTGGGGG
GCAAGCCCACGAAGACCTTCTGAATGAGAGCATCAAAGCCTGCCAGCGGGGCTTCTGTAGGGACGTGGCC
CTGGTGGTCACCAAGATGGACAAACTCCACTTGCCAGAATACCTAAGGGAAAGAAAGGCAGGAAATCAAG
CTATTCAGAGTCAGCGAGAGGCTGTTTTAGAAAGAAATGAAATGATAAAACTACAAAGGACTAGAATTCT
CAAGGAAAAACTGAAGAGAAAACTGCCAGCTGACTTCAAGGTTCTGGAAGCCTCAGATCTGGTGTATACA
GTCAGCGCCCAGGAGTACTGGCAGCAGGCTCTCCTCACCGAGGAGGAAACGGAAATCCCTAAGTTAAGAG
AATACATCAGGAAGAGCCTCTTGGACAAGAAGAAGAGGACAGTGACCAAGTATGTGACTGAAGCCTTTGG
CCTGTTGCTCCTCACAGATAGTTTCAACTCCACGCAAAACCTGCCGAATGAACACTTGCACATGAGTGTC
CTGCGGAGATTTGCGGAAGAGAAGGTTGAGCTGCTGGAGAAGGCCATCGCACAGTGCTTCGCCTGCATGG
AGCAGCCTCTGCAAGAAGGGGTCAGGACCGCCAGGACTTCTTACCGCTGCATCCTCAGAGCATGCTTGGT
GAGGAGTAAAGGAAACCAAGGTTTTCATCAGACCCTGAAAGCTGTTTGCCTGAAAAATGGCATCTATGCC
TCCAGGACTCTGGCGAGAATTGATCTAAATGAAGCCCTCACTCAGCCCGTCTATGACCAGATCGACCCTG
TTTTTGGAAGCATTTTTAGGACGGGGAAGCCCACTGGTTCAGCTCTGATGCCTCACATAGATGCTTTTAA
GCAGTCCCTGCAGGAGAAAATGACAGAAATTGGGATAAGAAGTGGCTGGAAATATGATAGCTGCAAAAAA
AATTTCCTGATCCAGGAGATAAGTGCCATCCTCGGGGGCCTGGAGGACCACATCCTCAGAAGGAAGAGGA
GGATCTACGAGTCCCTCACTGCCTCTGTCCAGAGTGACCTGAAGCTCTGTTACGAAGAGGCAGCTCAGAT
CACGGGCAAAAAAGCGTGTGAGCGGATGAAAGATGCCATCAGAAGAGGAGTGGACCGGCAGGTGGCTGAG
GGCATGTTTGAAAGGGCCCAGGAAAGGATGCAGCACCAGTTTCAGCAGCTGAAGACTGGAATCGTGGAGA
AGGTGAAGGGCAGCATCACCACTATGCTGGCCCTTGCTTCGTCCCAGGGGGATGGCCTCTACAAGGAGCT
TGCAGATGTCGGGAGTGAATACAAGGAGATGGAGAAGCTGCACAGAAGCCTGAGGGAGGTCGCGGAGAAT
GCACGGCTGAGGAAGGGCATGCAAGAATTCCTCCTAAGGGCATCCCCCAGCAAGGCTGGCCCCCCCGGGA
CATCACTGTAA

Translation (796 aa):
MAETKDVFGQEPHPVEDDLYKERTRKRRKSDRDQRFRAFPSMEQSALKEYEKLESRTRRVLSNTYQKLIQ
SVFLDDSIPNGVKYLINRLLALIEKPTVDPIYIALFGSTGAGKSSLINAIIQQAMFLPVSGESICTSCIV
QVSSGCCVQYEAKIHLLSDQEWREELKNLTKLLHRTEELSREEADAWNRDEAVEEATWKLQMIYGNGAES
KNYEELLRAKPKRKIPTSRVITLKAEEAEELSIKLDPYIRTQRRDWDGEAAEMRIWPLIKHVEVTLPKSD
LIPEGVVLVDIPGTGDFNSKRDEMWKKTIDKCSVIWVISDIERVSGGQAHEDLLNESIKACQRGFCRDVA
LVVTKMDKLHLPEYLRERKAGNQAIQSQREAVLERNEMIKLQRTRILKEKLKRKLPADFKVLEASDLVYT
VSAQEYWQQALLTEEETEIPKLREYIRKSLLDKKKRTVTKYVTEAFGLLLLTDSFNSTQNLPNEHLHMSV
LRRFAEEKVELLEKAIAQCFACMEQPLQEGVRTARTSYRCILRACLVRSKGNQGFHQTLKAVCLKNGIYA
SRTLARIDLNEALTQPVYDQIDPVFGSIFRTGKPTGSALMPHIDAFKQSLQEKMTEIGIRSGWKYDSCKK
NFLIQEISAILGGLEDHILRRKRRIYESLTASVQSDLKLCYEEAAQITGKKACERMKDAIRRGVDRQVAE
GMFERAQERMQHQFQQLKTGIVEKVKGSITTMLALASSQGDGLYKELADVGSEYKEMEKLHRSLREVAEN
ARLRKGMQEFLLRASPSKAGPPGTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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