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Report for CCDS47702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47702.1 Public Homo sapiens 7 GARIN1A 24 110 108 CCDS HistoryNCBI Gene:346653Re-query CCDS DB by CCDS ID:47702.1Re-query CCDS DB by GeneID:346653See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641987.1 ENSP00000493021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641987.1Link to Ensembl Protein Viewer:ENSP00000493021.1Re-query CCDS DB by Nucleotide ID:ENST00000641987Re-query CCDS DB by Protein ID:ENSP00000493021
Original member Current member EBI ENST00000641888.1 ENSP00000493352.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641888.1Link to Ensembl Protein Viewer:ENSP00000493352.1Re-query CCDS DB by Nucleotide ID:ENST00000641888Re-query CCDS DB by Protein ID:ENSP00000493352
Original member Current member EBI ENST00000682356.1 ENSP00000506740.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682356.1Link to Ensembl Protein Viewer:ENSP00000506740.1Re-query CCDS DB by Nucleotide ID:ENST00000682356Re-query CCDS DB by Protein ID:ENSP00000506740
Original member Current member NCBI NM_001128926.4 NP_001122398.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128926.4Link to Protein Sequence:NP_001122398.1Re-query CCDS DB by Nucleotide ID:NM_001128926Re-query CCDS DB by Protein ID:NP_001122398Link to BLAST:NP_001122398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122398.1 300 Q6NXP2-2 300 100% 0 0

Chromosomal Locations for CCDS 47702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128672398 128672550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128675675 128675859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128677564 128677813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128680031 128680149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128682964 128683159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAGTAAAATCAGGGGCCTCCCACCTGAGGTCAGGGAACCAGGCCCTGGAGTGGAACTTGGGGTGGAAA
ATGGCCTTCTTTGTCAACTGATTCATTCTCCAGAATTCAATTTGTTCTCCAACTCGGTGGTGTTTGAAAG
CAACTTTATCCAGGTCACTAAGCCCGGGAACTGGAGAGATGTCTGTGAAGGGTCTGCCACCGTGATCCTC
GGGGTCACCTCCTCGGTGCCCTCCCTGCCACTCCCCAATGTCCTCCTGATGGCCAATGTTACCTGGCCCC
AGGGTCCATTTACCACCTGGAGCACACCTGGTGACGCCCCAGTCATCAACCTCAGCAGGCTTCTCCCCCT
GAAGTACGTGGAGCTACGAATCTACGACCGGCTCCAGCGCATCCTGAGGGTTAGGACAGTGACCGAAAAG
ATCTACTATCTGAAGCTCCACGAAAAACACCCAGAGATTGTGTTTCAATTCTGGGTCCGCTTGGTGAAAA
TTCTGCAGAAAGGCCTGTCCATCACCACCAAAGACCCGAGAATCAAATTCACTCACTGCCTGGTGCCCAA
GATGCCCACCAACTCCACAGAAACAACACCTGAAAACAGCCTCCTGTCATCCCCCCAGCCCAGCGAGCCC
CTCGTGCTGCTGGCGGCTGAGCAGACCAGTGGCAGTTTCTCACAGCTCTCAGGAAAGCCCCAGCTCACAG
CAGACAGGAACAATGACACTGCCATTGAAATAGACAACTGCAGCAGCTACAAGATACCCTCTCCAGTGGC
ATCTCCAATCAATTTGAATATACCCATGAGAGCTGCCTTGAGCCACAGCCTCTGGGAACAAGAGGACTGG
AATGAGCACCTTCTACAAGTTCATATAGCCAGTTACCTAGGAGAGCACTTCTTGGGAGCCTGA

Translation (300 aa):
MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVIL
GVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEK
IYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEP
LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDW
NEHLLQVHIASYLGEHFLGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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