NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4727.1 Public Homo sapiens 6 ZBTB12 24 110 108 CCDS HistoryNCBI Gene:221527Re-query CCDS DB by CCDS ID:4727.1Re-query CCDS DB by GeneID:221527See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375527.3 ENSP00000364677.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375527.3Link to Ensembl Protein Viewer:ENSP00000364677.2Re-query CCDS DB by Nucleotide ID:ENST00000375527Re-query CCDS DB by Protein ID:ENSP00000364677
Original member Current member NCBI NM_181842.3 NP_862825.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181842.3Link to Protein Sequence:NP_862825.1Re-query CCDS DB by Nucleotide ID:NM_181842Re-query CCDS DB by Protein ID:NP_862825Link to BLAST:NP_862825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862825.1 459 Q9Y330 459 100% 0 0

Chromosomal Locations for CCDS 4727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31899926 31901305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCCTCTGGGGTGGAAGTCCTGCGCTTCCAGCTGCCCGGCCACGAGGCCGCAACGCTACGGAACATGA
ACCAGCTCCGGGCAGAGGAGCGGTTCTGCGACGTGACCATTGTGGCCGACAGCCTCAAGTTTCGAGGCCA
CAAGGTCATCTTGGCCGCCTGCTCACCCTTCCTGCGGGACCAGTTCCTGCTGAACCCCAGCTCGGAGCTG
CAGGTCTCCCTGATGCACAGTGCACGCATCGTGGCCGACTTGCTCCTCTCCTGCTACACGGGCGCCTTGG
AATTCGCTGTTAGGGACATCGTCAACTACCTTACAGCCGCCTCCTACCTGCAGATGGAGCACGTGGTGGA
GAAATGCCGGAATGCCCTCAGCCAGTTCATTGAGCCCAAAATAGGCCTCAAAGAGGATGGGGTCAGTGAG
GCTAGCCTTGTGAGCAGCATCAGCGCCACCAAGTCCCTCCTCCCTCCAGCCAGGACCCCAAAGCCAGCCC
CGAAGCCCCCACCCCCACCTCCTCTACCCCCTCCACTCCTGCGGCCAGTGAAGCTGGAGTTCCCACTGGA
TGAAGACTTGGAGCTGAAAGCCGAGGAAGAGGATGAGGATGAGGATGAGGACGTGTCTGACATCTGCATC
GTCAAGGTGGAGTCGGCCCTGGAGGTGGCACACCGGCTCAAACCCCCTGGAGGCCTGGGAGGGGGTCTGG
GCATTGGAGGCTCCGTGGGTGGCCACCTTGGGGAGCTGGCCCAGAGCAGCGTTCCCCCCAGCACTGTAGC
CCCACCGCAGGGTGTGGTGAAGGCCTGCTATAGCCTGTCGGAAGATGCAGAAGGGGAGGGCCTGCTGTTG
ATTCCCGGAGGCCGGGCCAGCGTGGGGGCCACCTCGGGCCTGGTGGAAGCAGCAGCGGTGGCCATGGCTG
CCCGGGGGGCGGGGGGCAGCCTGGGGGCGGGGGGCAGCCGGGGACCCCTGCCTGGGGGCTTCTCAGGTGG
AAACCCCTTAAAGAACATCAAGTGCACCAAGTGCCCGGAAGTGTTCCAGGGCGTGGAGAAGCTGGTCTTC
CACATGCGGGCGCAGCACTTCATCTTCATGTGCCCTCGCTGTGGCAAGCAGTTCAACCACAGCAGCAACC
TCAACCGCCACATGAACGTGCATCGTGGTGTCAAGTCACACTCGTGCGGCATCTGCGGCAAGTGCTTCAC
ACAGAAGTCCACCCTTCACGACCACCTCAACCTGCACTCGGGAGCGCGGCCCTACCGCTGCTCCTACTGC
GACGTGCGCTTCGCCCACAAGCCTGCCATTAGGCGGCACCTCAAGGAGCAACACGGCAAGACCACGGCCG
AGAACGTGCTGGAGGCCAGTGTGGCCGAGATTAACGTCCTCATCCGCTAG

Translation (459 aa):
MASGVEVLRFQLPGHEAATLRNMNQLRAEERFCDVTIVADSLKFRGHKVILAACSPFLRDQFLLNPSSEL
QVSLMHSARIVADLLLSCYTGALEFAVRDIVNYLTAASYLQMEHVVEKCRNALSQFIEPKIGLKEDGVSE
ASLVSSISATKSLLPPARTPKPAPKPPPPPPLPPPLLRPVKLEFPLDEDLELKAEEEDEDEDEDVSDICI
VKVESALEVAHRLKPPGGLGGGLGIGGSVGGHLGELAQSSVPPSTVAPPQGVVKACYSLSEDAEGEGLLL
IPGGRASVGATSGLVEAAAVAMAARGAGGSLGAGGSRGPLPGGFSGGNPLKNIKCTKCPEVFQGVEKLVF
HMRAQHFIFMCPRCGKQFNHSSNLNRHMNVHRGVKSHSCGICGKCFTQKSTLHDHLNLHSGARPYRCSYC
DVRFAHKPAIRRHLKEQHGKTTAENVLEASVAEINVLIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH