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Report for CCDS47156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47156.1 Public Homo sapiens 4 SPMIP2 24 110 108 CCDS HistoryNCBI Gene:152940Re-query CCDS DB by CCDS ID:47156.1Re-query CCDS DB by GeneID:152940See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434826.3 ENSP00000412215.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434826.3Link to Ensembl Protein Viewer:ENSP00000412215.2Re-query CCDS DB by Nucleotide ID:ENST00000434826Re-query CCDS DB by Protein ID:ENSP00000412215
Original member Current member NCBI NM_152543.3 NP_689756.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152543.3Link to Protein Sequence:NP_689756.2Re-query CCDS DB by Nucleotide ID:NM_152543Re-query CCDS DB by Protein ID:NP_689756Link to BLAST:NP_689756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689756.2 186 Q96LM5 186 100% 0 0

Chromosomal Locations for CCDS 47156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 158893703 158893717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158915170 158915359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158960286 158960344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158973079 158973311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 159035033 159035096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCATCTGTATCATACCAAAAGCCAACATCTACTACTGTGGGAAAACAAATGATTTTTACAGGTCCAG
ACTACATAAAGGATTATTTACCCAAAATTCATCAGCACACCTCCTATGTAGGAGAACAGCATCTGGCGTT
AGAAAAAACTGGAGATCTCAGATATTTATGGAGGCCTGCCTCAAATAGAAGCTTGCCAGCAAAATATAAA
CATGAGTACGTCAGTGAAATTGGTTGGAGAATACCACAGTATAATTTTATCAACAAATCAAGACTGGGGA
GTGGCTTTCATATCAAGTATGAAGAACTAAGTCAAGCTTCTCTTGATTCAATAACCCACAGATATCAAAA
CCCATGGCAACCAAAACCTCATGTCCTGGATATGCAAGGAAAACAGAGTCGCGCTTCTTTTGCCTGGCAT
ATGAGTGCTTTCGAGGACACTGATCAGAGAAATTCCAAATGGGCTATTCTTGTTAGGCAGTGTAAGTCAT
CATTGCCAAGAGCTTCCAAACCACCTAAGCTGCCGAAGCTACCAAAAAAGGAAAAGAAAAGGAAACATTA
A

Translation (186 aa):
MASVSYQKPTSTTVGKQMIFTGPDYIKDYLPKIHQHTSYVGEQHLALEKTGDLRYLWRPASNRSLPAKYK
HEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELSQASLDSITHRYQNPWQPKPHVLDMQGKQSRASFAWH
MSAFEDTDQRNSKWAILVRQCKSSLPRASKPPKLPKLPKKEKKRKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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