NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47115.1 Public Homo sapiens 4 BANK1 24 110 108 CCDS HistoryNCBI Gene:55024Re-query CCDS DB by CCDS ID:47115.1Re-query CCDS DB by GeneID:55024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428908.5 ENSP00000412748.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428908.5Link to Ensembl Protein Viewer:ENSP00000412748.1Re-query CCDS DB by Nucleotide ID:ENST00000428908Re-query CCDS DB by Protein ID:ENSP00000412748
Original member Current member EBI ENST00000508653.5 ENSP00000422314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508653.5Link to Ensembl Protein Viewer:ENSP00000422314.1Re-query CCDS DB by Nucleotide ID:ENST00000508653Re-query CCDS DB by Protein ID:ENSP00000422314
Original member Current member NCBI NM_001127507.3 NP_001120979.3 Accepted alive Link to Nucleotide Sequence:NM_001127507.3Link to Protein Sequence:NP_001120979.3Re-query CCDS DB by Nucleotide ID:NM_001127507Re-query CCDS DB by Protein ID:NP_001120979Link to BLAST:NP_001120979.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120979.3 652 Q8NDB2-4 652 100% 0 0

Chromosomal Locations for CCDS 47115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101790881 101790950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101855035 101855189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101862526 101862664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101870505 101870644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101895305 101895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101917993 101918189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102021514 102021592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102025201 102025509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102029960 102030265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102043839 102043907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102060211 102060389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102063075 102063138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102071275 102071304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102072345 102072400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102073684 102073743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGCTGCCAGCAGCGCCAGGCAAGGGGCTTGGGAGCCCGGACCCCGCCCCCTGCGGCCCAGCGCCCCCAG
ATTCTGAAGACTACTTTGAGGTCAACATTCCAACAGACCTACGAGCAAAACATTCTGGGGAAATAAGTGA
GAGAAAGGAAATTGAAGAACTATCAGAAGCTTCAAGAAACACCATACCACTAGCAGTGGTGCTTCCCACT
GAAATTCCATGTGAGAATCCTGGTGAAATATTCATAATTTTGAGAGATGAAGTAATTGGTGATACTGTAG
AGGTTGAATTTACATCAAGTAATAAGCGCATTAGAACACGGCCAGCCCTTTGGAATAAGAAAGTCTGGTG
CATGAAAGCTTTAGAGTTTCCTGCTGGTTCAGTCCATGTCAATGTCTACTGTGATGGAATCGTTAAAGCT
ACAACCAAAATTAAGTACTACCCAACAGCAAAGGCAAAGGAATGCCTATTCAGAATGGCAGATTCAGGAG
AGAGTTTGTGCCAGAATAGCATTGAAGAACTTGATGGTGTCCTTACATCCATATTCAAACATGAGATACC
ATATTATGAGTTCCAGTCTCTTCAAACTGAAATTTGTTCTCAAAACAAATATACTCATTTCAAAGAACTT
CCAACTCTTCTCCACTGTGCAGCAAAATTTGGCTTAAAGAACCTGGCTATTCATTTGCTTCAATGTTCAG
GAGCAACCTGGGCATCTAAGATGAAAAATATGGAGGGTTCAGACCCCGCACATATTGCTGAAAGGCATGG
TCACAAAGAACTCAAGAAAATCTTCGAAGACTTTTCAATCCAAGAAATTGACATAAATAATGAGCAAGAA
AATGATTATGAAGAGGATATTGCCTCATTTTCCACATATATTCCTTCCACACAGAACCCAGCATTTCATC
ATGAAAGCAGGAAGACATACGGGCAGAGTGCAGATGGAGCTGAGGCAAATGAAATGGAAGGGGAAGGAAA
ACAGAATGGATCAGGCATGGAGACCAAACACAGCCCACTAGAGGTTGGCAGTGAGAGTTCTGAAGACCAG
TATGATGACTTGTATGTGTTCATTCCTGGTGCTGATCCAGAAAATAATTCACAAGAGCCACTCATGAGCA
GCAGACCTCCTCTCCCCCCGCCGCGACCTGTAGCTAATGCCTTCCAACTGGAAAGACCTCACTTCACCTT
ACCAGGGACAATGGTGGAAGGCCAAATGGAAAGAAGTCAAAACTGGGGTCATCCTGGTGTTAGACAAGAA
ACAGGAGATGAACCCAAAGGAGAAAAAGAGAAGAAAGAAGAGGAAAAAGAGCAGGAGGAGGAAGAAGACC
CATATACTTTTGCTGAGATTGATGACAGTGAATATGACATGATATTGGCCAATCTGAGTATAAAGAAAAA
AACTGGGAGTCGGTCTTTCATTATAAATAGACCTCCTGCCCCCACACCCCGACCCACAAGTATACCTCCA
AAAGAGGAAACTACACCTTACATAGCTCAAGTGTTTCAACAAAAGACAGCCAGAAGACAATCTGATGATG
ACAAGTTCTGTGGTCTTCCTAAGAAACAAGACAGAGCTCGGATAGAGAGTCCAGCCTTTTCTACTCTCAG
GGGCTGTCTAACTGATGGTCAGGAAGAACTCATCCTCCTGCAGGAGAAAGTAAAGAATGGGAAAATGTCT
ATGGATGAAGCTCTGGAGAAATTTAAACACTGGCAGATGGGAAAAAGTGGCCTGGAAATGATTCAGCAGG
AGAAATTACGACAACTACGAGACTGCATTATTGGGAAAAGGCCAGAAGAAGAAAATGTCTATAATAAACT
CACCATTGTGCACCATCCAGGTGGTAAGGAAACTGCCCACAATGAAAATAAGTTTTATAATGTACACTTC
AGCAATAAGCTTCCTGCTCGACCCCAAGTTGAAAAGGAATTTGGTTTCTGTTGCAAGAAAGATCATTAA

Translation (652 aa):
MLPAAPGKGLGSPDPAPCGPAPPDSEDYFEVNIPTDLRAKHSGEISERKEIEELSEASRNTIPLAVVLPT
EIPCENPGEIFIILRDEVIGDTVEVEFTSSNKRIRTRPALWNKKVWCMKALEFPAGSVHVNVYCDGIVKA
TTKIKYYPTAKAKECLFRMADSGESLCQNSIEELDGVLTSIFKHEIPYYEFQSLQTEICSQNKYTHFKEL
PTLLHCAAKFGLKNLAIHLLQCSGATWASKMKNMEGSDPAHIAERHGHKELKKIFEDFSIQEIDINNEQE
NDYEEDIASFSTYIPSTQNPAFHHESRKTYGQSADGAEANEMEGEGKQNGSGMETKHSPLEVGSESSEDQ
YDDLYVFIPGADPENNSQEPLMSSRPPLPPPRPVANAFQLERPHFTLPGTMVEGQMERSQNWGHPGVRQE
TGDEPKGEKEKKEEEKEQEEEEDPYTFAEIDDSEYDMILANLSIKKKTGSRSFIINRPPAPTPRPTSIPP
KEETTPYIAQVFQQKTARRQSDDDKFCGLPKKQDRARIESPAFSTLRGCLTDGQEELILLQEKVKNGKMS
MDEALEKFKHWQMGKSGLEMIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPGGKETAHNENKFYNVHF
SNKLPARPQVEKEFGFCCKKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH