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Report for CCDS47032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47032.1 Public Homo sapiens 4 CLRN2 24 110 108 CCDS HistoryNCBI Gene:645104Re-query CCDS DB by CCDS ID:47032.1Re-query CCDS DB by GeneID:645104See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511148.2 ENSP00000424711.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511148.2Link to Ensembl Protein Viewer:ENSP00000424711.2Re-query CCDS DB by Nucleotide ID:ENST00000511148Re-query CCDS DB by Protein ID:ENSP00000424711
Original member Current member NCBI NM_001079827.2 NP_001073296.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079827.2Link to Protein Sequence:NP_001073296.1Re-query CCDS DB by Nucleotide ID:NM_001079827Re-query CCDS DB by Protein ID:NP_001073296Link to BLAST:NP_001073296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073296.1 232 A0PK11 232 100% 0 0

Chromosomal Locations for CCDS 47032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17515267 17515519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17522864 17523043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17526817 17527082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGCCTGGATGGTTCAAAAAGGCGTGGTATGGGCTGGCGTCTTTACTCAGCTTCTCCTCCTTCATCCTGA
TCATCGTTGCCCTGGTAGTGCCCCACTGGCTGAGTGGGAAAATCCTTTGTCAGACTGGAGTGGATCTGGT
CAACGCCACAGACAGAGAGCTGGTCAAGTTCATTGGGGACATTTACTACGGGCTCTTCCGAGGGTGTAAA
GTGCGGCAGTGTGGGCTTGGGGGCCGCCAATCCCAATTCACGATCTTCCCACACCTGGTGAAGGAGCTCA
ACGCAGGCCTTCATGTGATGATTCTGCTGCTCCTCTTCCTGGCCTTGGCCCTGGCTCTGGTCAGCATGGG
CTTTGCCATTCTTAACATGATCCAGGTCCCGTACCGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGG
AATGTCCTGGCAGGCGGCGTCGTGGCGTTAGCCATCGCCAGCTTCGTGGCTGCGGTGAAATTTCACGACC
TGACGGAACGAATCGCCAACTTTCAGGAGAAGCTCTTCCAGTTTGTGGTGGTGGAAGAACAGTATGAAGA
GTCGTTTTGGATCTGCGTGGCCAGCGCTTCGGCCCATGCTGCAAACTTGGTCGTGGTGGCGATCAGTCAA
ATTCCCCTCCCTGAGATTAAGACCAAAATCGAAGAGGCCACGGTCACAGCTGAGGATATCTTGTATTAA

Translation (232 aa):
MPGWFKKAWYGLASLLSFSSFILIIVALVVPHWLSGKILCQTGVDLVNATDRELVKFIGDIYYGLFRGCK
VRQCGLGGRQSQFTIFPHLVKELNAGLHVMILLLLFLALALALVSMGFAILNMIQVPYRAVSGPGGICLW
NVLAGGVVALAIASFVAAVKFHDLTERIANFQEKLFQFVVVEEQYEESFWICVASASAHAANLVVVAISQ
IPLPEIKTKIEEATVTAEDILY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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