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Report for CCDS46803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46803.1 Public Homo sapiens 3 ZNF619 24 110 108 CCDS HistoryNCBI Gene:285267Re-query CCDS DB by CCDS ID:46803.1Re-query CCDS DB by GeneID:285267See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46803.1
This CCDS representation is supported by the splicing pattern of BC143304.1. It should be noted that this mRNA is 5' partial and does not encode the first 4 aa of the protein. Therefore, this representation includes a 5' extension based on other transcript data at this locus. This extension completes an N-terminal KRAB box, as found in many other zinc finger proteins.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46803.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432264.4 ENSP00000388710.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000432264.4Link to Ensembl Protein Viewer:ENSP00000388710.2Re-query CCDS DB by Nucleotide ID:ENST00000432264Re-query CCDS DB by Protein ID:ENSP00000388710
Original member Current member NCBI NM_001145093.4 NP_001138565.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145093.4Link to Protein Sequence:NP_001138565.1Re-query CCDS DB by Nucleotide ID:NM_001145093Re-query CCDS DB by Protein ID:NP_001138565Link to BLAST:NP_001138565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138565.1 576 Q8N2I2-3 576 100% 0 0

Chromosomal Locations for CCDS 46803.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40477980 40478003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40481863 40482016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40482588 40482704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40486806 40488241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGCTCCAGACAGTGTGGTTCCAGGGCTTGGGCAGGAACCTGTTGTTTCAGGAGCCAGTAACCTTTGAGG
ATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGCACCCTACGCAGAGGGCCCTATACAGGGA
GGTGATGCTGGAGAATTATGCAAATGTGACTTCCTTGTCAGCATTTCCATTCCCCAAACCAGATCTGATA
TTCCAGCTGGAGCAAGGAGAAGCAGCATGGGGCCCAGATCCCTGGACACTTGCTGGGGGAGAGGCCCTGA
GAGGCATGTGCACAGGTGGTAAAACCAAGACTGAGAATGAGGAAAAAACTGCACAGCTAAACATTTCTAA
AGAATCAGAGTCCCACAGACTGATAGTGGAGGGACTGCTGATGGACGTTCCCCAGCACCCTGACTTCAAG
GACAGGTTAGAGAAGTCACAGCTACATGATACAGGGAATAAAACAAAGATAGGGGATTGCACAGATTTGA
CAGTCCAGGATCATGAATCTTCCACCACTGAAAGGGAGGAGATAGCCAGGAAATTGGAAGAAAGTAGTGT
CAGCACACATCTCATTACAAAGCAGGGTTTTGCCAAAGAACAGGTGTTTTATAAATGTGGTGAGTGTGGC
AGTTACTACAACCCACATTCAGACTTTCACCTGCATCAGAGAGTTCACACTAATGAGAAGCCCTACACAT
GCAAAGAATGTGGGAAAACCTTCAGATATAACTCAAAACTGTCACGGCATCAGAAAATCCACACTGGAGA
GAAACCATACTCATGTGAGGAATGTGGACAAGCCTTCAGTCAAAATTCCCACCTTCTTCAGCATCAGAAG
CTCCATGGTGGACAGAGGCCCTATGAATGTACTGACTGTGGTAAAACCTTCAGTTATAATTCAAAACTGA
TTCGGCATCAGAGAATCCATACTGGGGAGAAGCCCTTTAAATGTAAGGAATGTGGGAAAGCCTTCAGTTG
TAGCTATGACTGCATCATCCATGAACGAATTCACAATGGGGAGAAGCCCTATGAATGTAAGGAGTGTGGG
AAGAGTTTGAGTTCTAATTCAGTTCTGATTCAGCATCAGAGAATCCACACTGGGGAGAAACCTTATGAAT
GTAAAGAGTGTGGCAAGGCCTTCCACCGCAGTTCGGTATTTCTTCAGCACCAGAGGTTCCACACTGGGGA
ACAACTCTACAAATGTAATGAATGTTGGAAAACTTTCAGCTGTAGCTCCCGCTTCATAGTGCATCAGAGA
ATCCACAATGGGGAGAAACCCTATGAATGCCAGGAATGTGGGAAGACATTCAGTCAAAAGATCACTCTGG
TTCAGCATCAGCGAGTTCACACTGGGGAGAAACCTTATGAGTGTAAGGAGTGCGGGAAAGCCTTCAGATG
GAATGCAAGTTTCATCCAGCATCAGAAGTGGCATACTAGGAAGAAACTCATCAATGGAACAGGGCTATCC
GCAGTTAAGCCCTACTGTCCCTGCGCCATCCTCTCTCCTCTGCCTCCCCAACATACCTGCTCTGCCCTAG
CCCCACCAGGGCCTCCCTTATCTTCTTCACATGCAGTGGTACTTCCTCCCTCTGTGCCTTTCTTCCTGCT
GCTTCCCTCATCTGAAAAGGCCAACCCTTCACCTGTCCAAATAGCACATTTTTTTCAGGATCTCGCTTTT
CCTGGGAAGTCATCCCTTCAGAGCCCGAATCCTTTGTCTCACTCCCTGTAA

Translation (576 aa):
MLQTVWFQGLGRNLLFQEPVTFEDVAVYFTQNEWASLHPTQRALYREVMLENYANVTSLSAFPFPKPDLI
FQLEQGEAAWGPDPWTLAGGEALRGMCTGGKTKTENEEKTAQLNISKESESHRLIVEGLLMDVPQHPDFK
DRLEKSQLHDTGNKTKIGDCTDLTVQDHESSTTEREEIARKLEESSVSTHLITKQGFAKEQVFYKCGECG
SYYNPHSDFHLHQRVHTNEKPYTCKECGKTFRYNSKLSRHQKIHTGEKPYSCEECGQAFSQNSHLLQHQK
LHGGQRPYECTDCGKTFSYNSKLIRHQRIHTGEKPFKCKECGKAFSCSYDCIIHERIHNGEKPYECKECG
KSLSSNSVLIQHQRIHTGEKPYECKECGKAFHRSSVFLQHQRFHTGEQLYKCNECWKTFSCSSRFIVHQR
IHNGEKPYECQECGKTFSQKITLVQHQRVHTGEKPYECKECGKAFRWNASFIQHQKWHTRKKLINGTGLS
AVKPYCPCAILSPLPPQHTCSALAPPGPPLSSSHAVVLPPSVPFFLLLPSSEKANPSPVQIAHFFQDLAF
PGKSSLQSPNPLSHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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