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Report for CCDS46784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46784.1 Public Homo sapiens 3 ZNF860 24 110 108 CCDS HistoryNCBI Gene:344787Re-query CCDS DB by CCDS ID:46784.1Re-query CCDS DB by GeneID:344787See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360311.5 ENSP00000373274.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360311.5Link to Ensembl Protein Viewer:ENSP00000373274.3Re-query CCDS DB by Nucleotide ID:ENST00000360311Re-query CCDS DB by Protein ID:ENSP00000373274
Original member Current member NCBI NM_001137674.3 NP_001131146.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001137674.3Link to Protein Sequence:NP_001131146.2Re-query CCDS DB by Nucleotide ID:NM_001137674Re-query CCDS DB by Protein ID:NP_001131146Link to BLAST:NP_001131146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131146.2 632 A6NHJ4 632 100% 0 0

Chromosomal Locations for CCDS 46784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31989080 31990978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACACT
TGACTTTTAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGGACCCTACGCAGAGGGC
TTTATACAGGGCCATGATGTTGGAGAACTACAGGAACCTGCATTCTGTGGATATCTCTTCCAAATGCATG
ATGAAGAAGTTCTCATCAACAGCGCAAGGCAATACAGAAGTGGACACAGGGACATTAGAAAGACATGAAA
GTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGGGAAAGATATTCATGACTTTGAGTTTCAATGGCA
AGAAGACAAAAGAAATAGCCATGAAGCAACTATGACACAAATCAAAAAGTTGACTGGTAGCACCGACAGA
TATGATCGAAGGCATCCTGGAAACAAGCCTATCAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTTC
CTGAACTCCACATATTTCAGACCAAAGGGAAAGTTGGTAATCAAGTTGAGAAGTCTATCAACGATGCTTC
CTCAGTTCTAACGTCCCAAAGAATTTCTTCTAGGCCCAAAATCCATATTTCTAATAACTATGAAAATAAT
TTCTTCCATTCATCATTACTCACACTAAAACAGGAAGTACACATAAGAGAAAAATCTTTCCAATGTAATG
AGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAACATCAGATAATCTATTTAGGAGGGAAACA
ATATAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCATGCCATCATAGATGTCAC
ACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCAAGTC
ATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTTAGTCGCAAATC
AAATCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGAAAAGGCT
TTCAGGCGTGATTCACACCTCACACAACACACTAGAATTCACACTGGAGAGAAACCTTACAAGTGTAATG
AGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACT
TTATAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTGGAGAATCCAT
AATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTTAGACGTCGTTCATATCTCGTAGTTC
ATTGGCGAACTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTC
AGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACC
TTCCGTCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATG
AATGTGGCAAGGTTTTTAATCAACAAGCAACCCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACC
TTACAAATGTGAAGAATGTGACACAGTTTTCAGTCGCAAATCACACCATGAAACACATAAGAGAATTCAT
ACTGGAGAGAAACCTTACAAATGTGATGATTTTGACGAGGCCTTCAGTCAAGCTTCATCTTATGCAAAAC
AAAGGAGAATTCATATGGGAGAGAAACATCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTC
ACATCGCATTAGACATCAGAGAATCCATACCGGACAGAAATCTTACAAATGTCATAAGCGTGGCAAGGTC
TTCAGTTAG

Translation (632 aa):
MLREEAAQKRKEKEPGMALPQGHLTFRDVAIEFSLEEWKCLDPTQRALYRAMMLENYRNLHSVDISSKCM
MKKFSSTAQGNTEVDTGTLERHESHHIGDFCFQKIGKDIHDFEFQWQEDKRNSHEATMTQIKKLTGSTDR
YDRRHPGNKPIKDQLGLSFHSHLPELHIFQTKGKVGNQVEKSINDASSVLTSQRISSRPKIHISNNYENN
FFHSSLLTLKQEVHIREKSFQCNESGKAFNCSSLLRKHQIIYLGGKQYKCDVCGKVFNQKRYLACHHRCH
TGEKPYKCNECGKVFNQQSNLASHHRLHTGEKPYKCEECDKVFSRKSNLERHRRIHTGEKPYKCKVCEKA
FRRDSHLTQHTRIHTGEKPYKCNECGKAFSGQSTLIHHQAIHGIGKLYKCNDCHKVFSNATTIANHWRIH
NEERSYKCNKCGKFFRRRSYLVVHWRTHTGEKPYKCNECGKTFHHNSALVIHKAIHTGEKPYKCNECGKT
FRHNSALVIHKAIHTGEKPYKCNECGKVFNQQATLARHHRLHTGEKPYKCEECDTVFSRKSHHETHKRIH
TGEKPYKCDDFDEAFSQASSYAKQRRIHMGEKHHKCDDCGKAFTSHSHRIRHQRIHTGQKSYKCHKRGKV
FS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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