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Report for CCDS46698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46698.1 Public Homo sapiens 22 TOM1 24 110 108 CCDS HistoryNCBI Gene:10043Re-query CCDS DB by CCDS ID:46698.1Re-query CCDS DB by GeneID:10043See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 46698.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447733.5 ENSP00000398876.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447733.5Link to Ensembl Protein Viewer:ENSP00000398876.1Re-query CCDS DB by Nucleotide ID:ENST00000447733Re-query CCDS DB by Protein ID:ENSP00000398876
Original member Current member NCBI NM_001135729.2 NP_001129201.1 Accepted alive Link to Nucleotide Sequence:NM_001135729.2Link to Protein Sequence:NP_001129201.1Re-query CCDS DB by Nucleotide ID:NM_001135729Re-query CCDS DB by Protein ID:NP_001129201Link to BLAST:NP_001129201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129201.1 460 O60784-4 460 100% 0 0

Chromosomal Locations for CCDS 46698.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 35317924 35317961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35321959 35322037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323028 35323177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323496 35323630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323768 35323914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35327271 35327387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35330347 35330480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35332981 35333014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35333404 35333497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35334328 35334448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35338713 35338788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35345725 35345784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35346930 35346972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35347055 35347209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGAGATCTGCGACATCATCAACGAGACGGAGGAAGGTCCCAAAGATGCCCTCCGAGCAGTAAAGAAGA
GAATCGTGGGGAATAAGAACTTCCACGAGGTGATGCTGGCTCTCACAGTCTTAGAAACCTGTGTCAAGAA
CTGCGGGCACCGCTTCCACGTGCTGGTGGCCAGCCAGGACTTCGTGGAGAGTGTGCTGGTGAGGACCATC
CTGCCCAAGAACAACCCACCCACCATCGTGCATGACAAAGTGCTCAACCTCATCCAGTCCTGGGCTGACG
CGTTCCGCAGCTCGCCCGATCTGACAGGTGTGGTCACCATCTATGAGGACCTGCGGAGGAAAGGCCTGGA
GTTCCCCATGACTGACCTGGACATGCTGTCACCCATCCACACACCCCAGAGGACCGTGTTCAACTCAGAG
ACACAATCAGGACAGGATTCTGTGGGCACTGACTCCAGCCAGCAAGAGGACTCTGGCCAGCATGCTGCCC
CTCTGCCCGCCCCGCCCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAACAGATTGGGAAGCT
GCGCAGTGAGCTGGAGATGGTGAGTGGGAACGTGAGGGTGATGTCGGAGATGCTGACGGAGCTGGTGCCC
ACCCAGGCCGAGCCCGCAGACCTGGAGCTGCTGCAGGAGCTCAACCGCACGTGCCGAGCCATGCAGCAGC
GGGTCCTGGAGCTCATCCCTCAGATCGCCAATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAA
TCTCAACAATGTGTTCCTGCGCCATGAACGGTTTGAACGGTTCCGAACAGGCCAGACCACCAAGGCCCCA
AGTGAGGCCGAGCCGGCAGCTGACCTGATCGACATGGGCCCTGACCCAGCAGCCACCGGCAACCTCTCAT
CCCAGCTGGCAGGAATGAACCTGGGCTCCAGCAGTGTGAGAGCTGGCCTGCAGTCTCTGGAGGCCTCTGG
TCGACTGGAAGATGAGTTTGACATGTTTGCGCTGACACGGGGCAGCTCACTGGCTGACCAACGGAAAGAG
GTAAAATACGAAGCCCCCCAAGCAACAGACGGCCTGGCTGGAGCCCTGGACGCCCGGCAGCAGAGCACTG
GCGCGATCCCAGTCACCCAGGCCTGCCTCATGGAGGACATCGAGCAGTGGCTGTCCACTGACGTGGGTAA
TGATGCGGAAGAGCCTAAGGGGGTCACCAGCGAAGGTAAATTTGACAAATTCCTGGAAGAACGGGCCAAA
GCCGCGGACCGATTGCCCAACCTCTCCAGCCCCTCAGCTGAGGGGCCCCCGGGTCCCCCATCTGGCCCAG
CGCCCCGGAAGAAGACCCAGGAGAAAGATGATGACATGCTGTTTGCCTTATGA

Translation (460 aa):
MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTI
LPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSE
TQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLRSELEMVSGNVRVMSEMLTELVP
TQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRHERFERFRTGQTTKAP
SEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVRAGLQSLEASGRLEDEFDMFALTRGSSLADQRKE
VKYEAPQATDGLAGALDARQQSTGAIPVTQACLMEDIEQWLSTDVGNDAEEPKGVTSEGKFDKFLEERAK
AADRLPNLSSPSAEGPPGPPSGPAPRKKTQEKDDDMLFAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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