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Report for CCDS46602.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46602.2 Public Homo sapiens 20 L3MBTL1 24 110 108 CCDS HistoryNCBI Gene:26013Re-query CCDS DB by CCDS ID:46602.2Re-query CCDS DB by GeneID:26013See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 46602.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46602.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427442.8 ENSP00000402107.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427442.8Link to Ensembl Protein Viewer:ENSP00000402107.4Re-query CCDS DB by Nucleotide ID:ENST00000427442Re-query CCDS DB by Protein ID:ENSP00000402107
Original member Current member NCBI NM_032107.5 NP_115479.4 Accepted alive Link to Nucleotide Sequence:NM_032107.5Link to Protein Sequence:NP_115479.4Re-query CCDS DB by Nucleotide ID:NM_032107Re-query CCDS DB by Protein ID:NP_115479Link to BLAST:NP_115479.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115479.4 840 Q9Y468-5 840 100% 0 0

Chromosomal Locations for CCDS 46602.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43513570 43513639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43513838 43514061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43514635 43514776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515009 43515159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515292 43515415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43516093 43516177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43528657 43528745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43529264 43529368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530284 43530419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530798 43530889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43532773 43532924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43533342 43533418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534008 43534093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534284 43534394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534828 43534942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43535837 43535936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536097 43536294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536409 43536458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540151 43540308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540753 43540815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540934 43541128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGCACTTGGTGGCCGGAGACAGCCCCGGTTCTGGTCCTCACCTGCCCGCAACTGCCTTCATCATTCCAG
CCAGTTCGGCCACCCTCGGCCTGCCCAGCAGTGCCCTGGATGTGTCTTGCTTTCCCCGGGAGCCAATCCA
TGTGGGTGCCCCGGAGCAAGTGGCCGGCTGCGAACCAGTTTCTGCCACCGTCCTGCCGCAGCTTAGCGCC
GGGCCGGCCAGCTCCAGCACCAGCACAGTGCGGCTTCTGGAATGGACAGAGGCCGCGGCCCCGCCCCCAG
GGGGCGGCCTGCGGTTCCGGATAAGCGAGTATAAGCCGCTGAACATGGCGGGAGTGGAGCAGCCCCCGAG
CCCCGAGCTGCGGCAGGAAGGCGTGACCGAATACGAAGATGGCGGGGCCCCGGCGGGAGATGGCGAGGCG
GGCCCCCAACAGGCGGAGGACCACCCCCAGAATCCTCCAGAAGATCCCAATCAGGACCCCCCAGAGGATG
ATAGCACCTGTCAGTGCCAGGCGTGCGGGCCTCACCAAGCCGCGGGTCCAGATCTTGGTTCCTCTAATGA
TGGCTGCCCTCAGCTGTTCCAGGAGCGGTCAGTCATAGTGGAGAACTCCTCAGGCTCTACCAGCGCTTCT
GAGCTCCTCAAACCCATGAAGAAGAGGAAGCGCAGGGAATACCAGAGCCCATCAGAGGAGGAGTCGGAGC
CAGAGGCCATGGAGAAGCAAGAAGAAGGAAAGGACCCAGAGGGACAACCCACTGCTAGCACCCCAGAGAG
TGAGGAGTGGAGCAGCAGCCAGCCTGCAACAGGTGAGAAGAAGGAATGCTGGTCGTGGGAGTCCTACCTA
GAGGAGCAGAAGGCCATTACTGCTCCAGTCAGCCTCTTCCAGGACTCCCAGGCAGTCACTCACAACAAGA
ATGGCTTCAAACTGGGCATGAAGTTGGAAGGCATTGACCCTCAACACCCGTCCATGTACTTCATCCTCAC
CGTGGCTGAGGTATGTGGCTATCGCCTACGCCTGCACTTTGATGGGTATTCTGAGTGCCATGACTTCTGG
GTCAATGCCAACTCCCCTGACATTCACCCTGCTGGCTGGTTCGAGAAGACGGGCCACAAGCTGCAGCCTC
CCAAAGGTTACAAGGAGGAGGAGTTCAGCTGGAGCCAGTACCTGCGCAGCACAAGAGCTCAGGCTGCCCC
CAAGCACCTGTTTGTGAGCCAGAGCCACAGTCCCCCACCCCTGGGCTTCCAGGTGGGCATGAAGCTGGAG
GCTGTTGACCGCATGAACCCGTCCCTTGTCTGCGTGGCCAGTGTGACCGATGTGGTGGACAGCCGCTTCC
TGGTGCACTTTGACAACTGGGATGATACTTATGACTACTGGTGTGATCCCAGCAGCCCCTACATCCACCC
AGTGGGCTGGTGCCAGAAGCAAGGAAAGCCCCTCACCCCTCCACAAGACTACCCAGACCCTGATAACTTC
TGTTGGGAGAAATATCTGGAAGAAACTGGGGCCTCTGCTGTCCCCACCTGGGCCTTCAAGGTGCGACCCC
CTCACAGCTTCCTGGTCAATATGAAGCTGGAGGCTGTGGACCGCAGGAACCCAGCCCTGATTCGCGTGGC
CAGCGTGGAGGATGTGGAGGACCATCGGATAAAGATCCACTTTGATGGCTGGAGTCATGGCTATGATTTC
TGGATCGACGCTGACCACCCAGACATCCACCCTGCCGGCTGGTGCTCCAAGACAGGACATCCCCTGCAGC
CTCCTCTCGGACCCAGAGAGCCCAGCTCTGCCTCCCCTGGGGGCTGTCCCCCTCTCAGCTATAGGAGCCT
GCCCCACACTAGGACCTCCAAATACAGCTTTCACCACCGGAAGTGCCCCACTCCTGGTTGCGACGGCTCT
GGCCATGTCACAGGCAAGTTCACAGCTCACCATTGCCTCTCAGGCTGCCCACTGGCTGAGAGGAACCAGA
GCCGGCTGAAAGCGGAGCTGTCTGACTCGGAGGCCTCAGCCCGCAAGAAGAACCTCTCAGGCTTCTCCCC
AAGGAAGAAGCCTCGCCATCACGGCCGAATTGGACGCCCTCCGAAGTATCGAAAGATTCCGCAGGAAGAT
TTCCAGACCCTCACGCCCGATGTCGTGCACCAGTCCCTCTTCATGTCAGCCCTGTCGGCCCACCCTGACC
GCTCACTCTCAGTGTGCTGGGAGCAGCACTGCAAGCTCCTGCCAGGAGTAGCGGGCATCTCAGCCTCGAC
AGTCGCCAAGTGGACCATCGATGAGGTCTTCGGCTTTGTTCAGACCCTGACAGGTTGTGAGGACCAAGCA
CGCCTCTTCAAAGACGAGGCAAGAATAGTCAGAGTGACCCATGTATCTGGGAAGACTCTAGTCTGGACTG
TGGCCCAGCTTGGGGACCTTGTGTGCTCAGATCATCTTCAGGAAGGAAAAGGCATCCTGGAGACAGGAGT
CCATTCACTCCTCTGCTCTCTACCCACTCATTTGCTTGCCAAACTTAGCTTTGCCAGTGATAGTCAATAT
TAA

Translation (840 aa):
MHLVAGDSPGSGPHLPATAFIIPASSATLGLPSSALDVSCFPREPIHVGAPEQVAGCEPVSATVLPQLSA
GPASSSTSTVRLLEWTEAAAPPPGGGLRFRISEYKPLNMAGVEQPPSPELRQEGVTEYEDGGAPAGDGEA
GPQQAEDHPQNPPEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDGCPQLFQERSVIVENSSGSTSAS
ELLKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKKECWSWESYL
EEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFW
VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLE
AVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNF
CWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDF
WIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLPHTRTSKYSFHHRKCPTPGCDGS
GHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPRKKPRHHGRIGRPPKYRKIPQED
FQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGVAGISASTVAKWTIDEVFGFVQTLTGCEDQA
RLFKDEARIVRVTHVSGKTLVWTVAQLGDLVCSDHLQEGKGILETGVHSLLCSLPTHLLAKLSFASDSQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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