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Report for CCDS46597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46597.1 Public Homo sapiens 20 DSN1 24 110 108 CCDS HistoryNCBI Gene:79980Re-query CCDS DB by CCDS ID:46597.1Re-query CCDS DB by GeneID:79980See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46597.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448110.6 ENSP00000404463.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448110.6Link to Ensembl Protein Viewer:ENSP00000404463.1Re-query CCDS DB by Nucleotide ID:ENST00000448110Re-query CCDS DB by Protein ID:ENSP00000404463
Original member Current member NCBI NM_001145318.2 NP_001138790.1 Accepted alive Link to Nucleotide Sequence:NM_001145318.2Link to Protein Sequence:NP_001138790.1Re-query CCDS DB by Nucleotide ID:NM_001145318Re-query CCDS DB by Protein ID:NP_001138790Link to BLAST:NP_001138790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138790.1 340 Q9H410-4 340 100% 0 0

Chromosomal Locations for CCDS 46597.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36752788 36752897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36754763 36754850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36755682 36755829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36758087 36758161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36758558 36758617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36762461 36762548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36766769 36766841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36767969 36768042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36770873 36771179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGTCTAAGACTCATGATCATCAATTGGAATCAAGTCTCAGTCCTGTGGAAGTGTTTGCTAAAACATCTG
CCTCCCTGGAGATGAATCAAGGCGTTTCAGAGGAAAGAATTCACCTTGGCTCTAGCCCTAAAAAAGGGGG
AAATTGTGATCTCAGCCACCAGGAAAGACTTCAGTCGAAGTCCCTTCATTTGTCTCCTCAAGAACAATCT
GCCAGTTATCAAGACAGGAGGCAATCCTGGCGGCGAGCAAGTATGAAAGAAACGAACCGGCGGAAGTCGC
TGCATCCCATTCACCAGGGCATCACAGAGCTCAGCCGGTCTATCAGTGTCGATTTAGCAGAAAGCAAACG
GCTTGGCTGTCTCCTGCTTTCCAGTTTCCAGTTCTCTATTCAGAAACTTGAACCTTTCCTAAGGGACACT
AAGGGCTTCAGTCTTGAAAGTTTTAGAGCCAAAGCATCTTCTCTTTCTGAAGAATTGAAACATTTTGCAG
ACGGACTGGAAACTGATGGAACTCTACAAAAATGTTTTGAAGATTCAAATGGAAAAGCATCAGATTTTTC
TTTGGAAGCATCTGTGGCTGAGATGAAGGAATACATAACAAAGTTTTCTTTAGAACGTCAGACTTGGGAT
CAGCTCTTGCTTCACTACCAGCAGGAGGCTAAAGAGATATTGTCCAGAGGATCAACTGAGGCCAAAATTA
CTGAGGTCAAAGTGGAACCTATGACATATCTTGGGTCTTCTCAGAATGAAGTTCTTAATACAAAACCTGA
CTACCAGAAAATATTACAGAACCAGAGCAAAGTCTTTGACTGTATGGAGTTGGTGATGGATGAACTGCAA
GGATCAGTGAAACAGCTGCAGGCCTTTATGGATGAAAGTACCCAGTGCTTCCAGAAGGTGTCAGTACAGC
TCGGAAAGAGAAGCATGCAACAATTAGATCCCTCACCAGCTCGAAAACTGTTGAAGCTTCAGCTACAGAA
CCCACCTGCCATACATGGATCTGGATCTGGATCTTGTCAGTGA

Translation (340 aa):
MSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPKKGGNCDLSHQERLQSKSLHLSPQEQS
ASYQDRRQSWRRASMKETNRRKSLHPIHQGITELSRSISVDLAESKRLGCLLLSSFQFSIQKLEPFLRDT
KGFSLESFRAKASSLSEELKHFADGLETDGTLQKCFEDSNGKASDFSLEASVAEMKEYITKFSLERQTWD
QLLLHYQQEAKEILSRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQNQSKVFDCMELVMDELQ
GSVKQLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGSGSGSCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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