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Report for CCDS46573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46573.1 Under review, update Homo sapiens 20 EBF4 24 110 108 CCDS HistoryNCBI Gene:57593Re-query CCDS DB by CCDS ID:46573.1Re-query CCDS DB by GeneID:57593See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380648.9 ENSP00000370022.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380648.9Link to Ensembl Protein Viewer:ENSP00000370022.4Re-query CCDS DB by Nucleotide ID:ENST00000380648Re-query CCDS DB by Protein ID:ENSP00000370022
Original member NCBI NM_001110514.1 NP_001103984.1 Updated not alive Link to Nucleotide Sequence:NM_001110514.1Link to Protein Sequence:NP_001103984.1Re-query CCDS DB by Nucleotide ID:NM_001110514Re-query CCDS DB by Protein ID:NP_001103984
Current member NCBI NM_001110514.2 NP_001103984.2 Pending alive Link to Nucleotide Sequence:NM_001110514.2Link to Protein Sequence:NP_001103984.2Re-query CCDS DB by Nucleotide ID:NM_001110514Re-query CCDS DB by Protein ID:NP_001103984Link to BLAST:NP_001103984.2

Chromosomal Locations for CCDS 46573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2693146 2693148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2693661 2693782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2705577 2705733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2705974 2706037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2706209 2706264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2707947 2708020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2709574 2709642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2748549 2748630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749401 2749518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749620 2749753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749847 2749973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2751700 2751788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2751922 2751987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2752086 2752263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2752357 2752545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2755627 2755824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2758909 2758979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGACGCTCTGCCCCGCAGCGGGCTGAACCTGAAGGAGGAGCCGCTGCTGCCCGCCGGCCTGGGCTCAG
TGCGCTCCTGGATGCAGGGCGCGGGCATCCTGGACGCCAGCACCGCGGCGCAGAGTGGCGTGGGTCTGGC
ACGAGCACATTTTGAGAAGCAGCCTCCCTCCAACCTCAGGAAATCCAACTTCTTCCACTTCGTGCTGGCC
ATGTACGACCGGCAGGGGCAGCCCGTGGAGGTGGAGCGCACAGCCTTCATCGACTTCGTGGAAAAGGACC
GAGAGCCCGGGGCGGAAAAGACTAACAATGGGATCCATTACCGCCTCCGGCTGGTGTATAACAATGGACT
GCGGACAGAGCAAGACCTCTACGTGCGTCTCATCGACTCCATGTCCAAACAGGCCATCATCTATGAGGGG
CAGGACAAGAACCCCGAAATGTGCCGAGTGCTGCTCACCCATGAGATCATGTGCAGCCGGTGCTGTGACC
GGAAGAGCTGTGGCAACCGGAATGAGACGCCCTCAGACCCCGTCATCATTGACAGGTTCTTCCTCAAGTT
CTTCCTCAAATGCAACCAGAACTGCCTGAAGAATGCGGGGAATCCCAGAGACATGCGCCGCTTCCAGGTG
GTGGTGTCCACGACGGTGAGCGTGGACGGACACGTGCTGGCCGTGTCCGACAACATGTTTGTGCACAACA
ACTCCAAGCATGGCCGCAGGGCGCGCCGCCTGGACCCCTCCGAAGCTGCCACCCCCTGCATCAAGGCCAT
CAGCCCCGGGGAGGGCTGGACCACGGGCGGCGCCACCGTCATTGTCATCGGCGACAACTTCTTCGACGGG
TTGCAGGTCGTGTTCGGAAACGTGCTCGTGTGGAGCGAGCTCATCACGCCCCACGCCATCCGGGTGCAGA
CGCCCCCGCGGCACATCCCCGGGGTGGTGGAGGTGACCCTCTCCTACAAGTCCAAGCAGTTTTGCAAGGG
ATGCCCCGGCCGCTTTGTCTACACAGCTCTGAACGAGCCCACCATTGACTACGGATTCCAGAGGCTACAG
AAAGTCATTCCCAGACACCCCGGAGACCCCGAGAGGCTGCCCAAGGAAGTGCTGCTGAAGCGGGCGGCCG
ACTTGGCAGAAGCCCTGTACGGAGTGCCCGGCAGTAACCAGGAGCTGCTCCTGAAGCGCGCGGCGGACGT
GGCCGAGGCTCTGTACAGCACCCCCCGCGCACCCGGGCCGCTCGCACCCCTGGCCCCGAGCCACCCACAC
CCCGCCGTCGTGGGCATCAACGCCTTCAGCAGCCCGCTGGCCATCGCCGTCGGGGACGCCACCCCGGGGC
CCGAGCCGGGCTACGCGCGCAGCTGCAGCAGCGCGTCCCCCCGCGGGTTCGCGCCCAGCCCCGGCTCGCA
GCAGAGCGGCTACGGCGGCGGCCTCGGAGCTGGCCTGGGCGGCTACGGCGCGCCGGGCGTGGCCGGCCTC
GGCGTGCCTGGGTCCCCCAGCTTCCTCAATGGCTCCACCGCCACCTCGCCCTTCGCCATCATGCCCTCTA
GCCCCCCGCTGGCGGCTGCCTCCTCCATGTCCCTCCCGGCCGCTGCCCCCACCACCAGCGTGTTCTCCTT
CTCGCCTGTCAACATGATCTCCGCCGTCAAACAGAGGAGCGCCTTCGCCCCCGTGCTGCGCCCCCCAAGC
TCCCCACCCCAGGCCTGCCCCAGAGCCCACGGAGAGGGGCTTCCAGACCAGTCTTTTGAGGATTCTGACA
AGTTTCACTCTCCAGCCCGGGGGCTTCAGGGCCTGGCATACTCCTAA

Translation (598 aa):
MDALPRSGLNLKEEPLLPAGLGSVRSWMQGAGILDASTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLA
MYDRQGQPVEVERTAFIDFVEKDREPGAEKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMSKQAIIYEG
QDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQV
VVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIVIGDNFFDG
LQVVFGNVLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGCPGRFVYTALNEPTIDYGFQRLQ
KVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQELLLKRAADVAEALYSTPRAPGPLAPLAPSHPH
PAVVGINAFSSPLAIAVGDATPGPEPGYARSCSSASPRGFAPSPGSQQSGYGGGLGAGLGGYGAPGVAGL
GVPGSPSFLNGSTATSPFAIMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMISAVKQRSAFAPVLRPPS
SPPQACPRAHGEGLPDQSFEDSDKFHSPARGLQGLAYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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