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Report for CCDS46541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46541.1 Public Homo sapiens 2 PTMA 24 110 108 CCDS HistoryNCBI Gene:5757Re-query CCDS DB by CCDS ID:46541.1Re-query CCDS DB by GeneID:5757See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409115.8 ENSP00000386819.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409115.8Link to Ensembl Protein Viewer:ENSP00000386819.3Re-query CCDS DB by Nucleotide ID:ENST00000409115Re-query CCDS DB by Protein ID:ENSP00000386819
Original member Current member NCBI NM_002823.5 NP_002814.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002823.5Link to Protein Sequence:NP_002814.3Re-query CCDS DB by Nucleotide ID:NM_002823Re-query CCDS DB by Protein ID:NP_002814Link to BLAST:NP_002814.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002814.3 110 P06454-2 110 100% 0 0

Chromosomal Locations for CCDS 46541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231708707 231708751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231711348 231711419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231711890 231711983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231712443 231712516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231712804 231712851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAAGGAAGTTG
TGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGA
GGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGAT
GGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATG
ATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAG

Translation (110 aa):
MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGD
GEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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