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Report for CCDS46468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46468.1 Public Homo sapiens 2 PPP1R1C 24 110 108 CCDS HistoryNCBI Gene:151242Re-query CCDS DB by CCDS ID:46468.1Re-query CCDS DB by GeneID:151242See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46468.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409137.7 ENSP00000386359.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409137.7Link to Ensembl Protein Viewer:ENSP00000386359.3Re-query CCDS DB by Nucleotide ID:ENST00000409137Re-query CCDS DB by Protein ID:ENSP00000386359
Original member Current member EBI ENST00000409702.1 ENSP00000386778.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409702.1Link to Ensembl Protein Viewer:ENSP00000386778.1Re-query CCDS DB by Nucleotide ID:ENST00000409702Re-query CCDS DB by Protein ID:ENSP00000386778
Original member Current member EBI ENST00000682840.1 ENSP00000507052.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682840.1Link to Ensembl Protein Viewer:ENSP00000507052.1Re-query CCDS DB by Nucleotide ID:ENST00000682840Re-query CCDS DB by Protein ID:ENSP00000507052
Original member Current member NCBI NM_001080545.3 NP_001074014.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080545.3Link to Protein Sequence:NP_001074014.1Re-query CCDS DB by Nucleotide ID:NM_001080545Re-query CCDS DB by Protein ID:NP_001074014Link to BLAST:NP_001074014.1
Original member Current member NCBI NM_001261425.2 NP_001248354.1 Accepted alive Link to Nucleotide Sequence:NM_001261425.2Link to Protein Sequence:NP_001248354.1Re-query CCDS DB by Nucleotide ID:NM_001261425Re-query CCDS DB by Protein ID:NP_001248354Link to BLAST:NP_001248354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074014.1 109 Q8WVI7-1 109 100% 0 0
NP_001248354.1 109 Q8WVI7-1 109 100% 0 0

Chromosomal Locations for CCDS 46468.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181986111 181986191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181987839 181987899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 182061442 182061479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 182063731 182063791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 182117207 182117295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGAGCCCAACAGTCCCAAAAAGATACAGTTTGCCGTGCCTGTATTCCAGAGTCAGATTGCACCTGAAG
CAGCAGAGCAGATCAGGAAAAGAAGACCTACACCAGCATCACTTGTGATTCTCAATGAGCATAACCCCCC
AGAAATAGATGACAAGAGGGGGCCCAACACACAAGGGGAATTACAGAATGCATCCCCTAAGCAAAGGAAG
CAGAGTGTGTACACACCACCCACCATAAAAGGGGTTAAGCATCTGAAAGGCCAGAATGAATCAGCATTCC
CTGAAGAAGAAGAAGGCACCAATGAAAGAGAGGAGCAGCGGGACCATTAA

Translation (109 aa):
MEPNSPKKIQFAVPVFQSQIAPEAAEQIRKRRPTPASLVILNEHNPPEIDDKRGPNTQGELQNASPKQRK
QSVYTPPTIKGVKHLKGQNESAFPEEEEGTNEREEQRDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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