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Report for CCDS46425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46425.1 Public Homo sapiens 2 ARL5A 24 110 108 CCDS HistoryNCBI Gene:26225Re-query CCDS DB by CCDS ID:46425.1Re-query CCDS DB by GeneID:26225See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446896.7 ENSP00000394626.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446896.7Link to Ensembl Protein Viewer:ENSP00000394626.3Re-query CCDS DB by Nucleotide ID:ENST00000446896Re-query CCDS DB by Protein ID:ENSP00000394626
Original member Current member EBI ENST00000428992.2 ENSP00000415950.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428992.2Link to Ensembl Protein Viewer:ENSP00000415950.1Re-query CCDS DB by Nucleotide ID:ENST00000428992Re-query CCDS DB by Protein ID:ENSP00000415950
Original member Current member NCBI NM_001037174.2 NP_001032251.1 Accepted alive Link to Nucleotide Sequence:NM_001037174.2Link to Protein Sequence:NP_001032251.1Re-query CCDS DB by Nucleotide ID:NM_001037174Re-query CCDS DB by Protein ID:NP_001032251Link to BLAST:NP_001032251.1
Original member Current member NCBI NM_177985.3 NP_817114.2 Accepted alive Link to Nucleotide Sequence:NM_177985.3Link to Protein Sequence:NP_817114.2Re-query CCDS DB by Nucleotide ID:NM_177985Re-query CCDS DB by Protein ID:NP_817114Link to BLAST:NP_817114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032251.1 142 Q9Y689-2 142 100% 0 0
NP_817114.2 142 Q9Y689-2 142 100% 0 0

Chromosomal Locations for CCDS 46425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151803276 151803324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151806821 151806972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151812357 151812440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151814169 151814312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACAC
GTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACAC
AGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTAT
AAAATGTTAGCGCATGAGGACCTAAGAAAAGCTGGATTGCTGATTTTTGCTAATAAACAAGATGTTAAAG
AATGCATGACTGTAGCAGAAATCTCCCAGTTTTTGAAGCTAACTTCTATTAAAGATCACCAGTGGCATAT
CCAGGCATGCTGTGCTCTAACTGGCGAGGGATTGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAG
ATTAGATGA

Translation (142 aa):
MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELY
KMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK
IR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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