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Report for CCDS46394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46394.1 Public Homo sapiens 2 RGPD8 24 110 108 CCDS HistoryNCBI Gene:727851Re-query CCDS DB by CCDS ID:46394.1Re-query CCDS DB by GeneID:727851See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302558.8 ENSP00000306637.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302558.8Link to Ensembl Protein Viewer:ENSP00000306637.3Re-query CCDS DB by Nucleotide ID:ENST00000302558Re-query CCDS DB by Protein ID:ENSP00000306637
Original member Current member NCBI NM_001164463.1 NP_001157935.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164463.1Link to Protein Sequence:NP_001157935.1Re-query CCDS DB by Nucleotide ID:NM_001164463Re-query CCDS DB by Protein ID:NP_001157935Link to BLAST:NP_001157935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157935.1 1765 O14715 1765 100% 0 0

Chromosomal Locations for CCDS 46394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112370178 112370212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112378053 112378254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112380824 112380963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112388024 112390247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112390975 112391069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112394618 112394753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112397922 112398005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112398099 112398278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112399223 112399369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112399632 112399769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112400036 112400194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112401117 112401240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112401408 112401583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112401667 112401848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112403966 112404175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112406297 112406384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112412431 112412626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112417193 112417338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112417684 112417914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112421960 112422112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112422548 112422659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112424240 112424307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112433382 112433453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5298 nt):
ATGAGGCGCAGCAAGGCCGATGTGGAGCGGTACGTCGCCTCGGTGCTGGGTCTCACCCCGTCGCCTCGAC
AGAAGTCAATGAAAGGATTCTATTTTGCAAAGCTGTATTATGAAGCTAAAGAATATGATCTTGCTAAAAA
ATACATATGTACTTACATTAATGTGCAAGAGAGGGATCCCAAAGCTCACAGATTTCTGGGTCTTCTTTAT
GAATTGGAAGAAAACACAGAGAAAGCCGTTGAATGTTACAGGCGTTCAGTGGAATTAAACCCAACACAAA
AAGATCTTGTGTTGAAGATTGCAGAATTGCTTTGTAAAAATGATGTTACTGATGGAAGAGCAAAATACTG
GGTCGAAAGAGCAGCAAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGGAACAGCTTCTAGAT
TGTGAAGGTGAAGATGGATGGAATAAACTTTTTGACTTGATTCAGTCAGAACTTTATGTAAGACCTGATG
ACGTCCATGTGAACATCCGGCTAGTGGAGTTGTATCGCTCAACTAAAAGATTGAAGGATGCTGTGGCCCA
CTGCCATGAGGCAGAGAGGAACATAGCTTTGCGTTCAAGTTTAGAGTGGAATTCGTGTGTTGTACAGACC
CTTAAGGAATATCTGGAGTCTTTACAGTGTTTGGAGTCTGATAAAAGTGACTGGCGAGCAACCAATACAG
ACTTACTGCTGGCCTATGCTAATCTTATGCTTCTTACGCTTTCCACTAGAGATGTGCAGGAAAATAGAGA
ATTACTGGAAAGTTTTGATAGTGCTCTTCAGTCTGCGAAATCTTCTTTGGGTGGAAATGATGAACTGTCA
GCTACTTTCTTAGAAATGAAAGGACATTTCTATATGTATGCTGGTTCTCTGCTCTTGAAGATGGGTCAGC
ATGGTAATAATGTTCAATGGCGAGCTCTTTCTGAGCTGGCTGCATTGTGCTATCTCATAGCATTTCAGGT
TCCAAGACCAAAGATTAAATTAAGAGAAGGTAAAGCTGGACAAAATCTGCTGGAAATGATGGCCTGTGAC
CGACTGAGCCAATCAGGGCACATGTTGCTAAGCTTAAGTCGTGGCAAGCAAGATTTCTTAAAAGAGGTTG
TTGAAACTTTTGCCAACAAAATTGGGCAGTCTGCGTTATATGATGCTCTGTTTTCTAGTCAGTCACCTAA
GGATACATCTTTTCTTGGTAGCGATGATATTGGAAAAATTGATGTACAAGAACCAGAGCTTGAAGATTTG
GCTAGATACGATGTTGGTGCTATTCGAGCACATAATGGTAGTCTTCAGCATCTTACTTGGCTTGGCTTAC
AGTGGAATTCATTGCCTGCTTTACCTGGAATCCGAAAATGGCTAAAACAGCTTTTCCATCGTTTGCCCCA
TGAAACCTCAAGGCTTGAAACAAATGCGCCTGAATCAATATGTATTTTAGATCTTGAAGTATTTCTCCTT
GGAGTAGTATATACCAGCCACTTACAATTAAAGGAGAAATGTAATTCTCACCATAGCTCCTATCAGCCGT
TATGCCTGCCCTTTCCTGTGTGTAAACAGCTTTGTACAGAAAGACAAAAATCTTGGTGGGATGCGGTTTG
TACTCTGATTCACAGAAAAGCAGTACCTGGAAACTTGGCAAAATTGAGACTTCTAGTTCAGCATGAAATA
AACACTCTAAGAGCCCAGGAAAAACATGGCCTTCAACCTGCTCTGCTTGTACATTGGGCAAAATACCTTC
AGAAAACGGGCAGCGGTCTTAATTCTTTTTATGGTCAACTAGAATACATAGGGAGAAGTGTTCATTATTG
GAAGAAAGTTTTGCCATTGTTGAAGATAATAAAGAAGAACAGTATTCCTGAACCTATTGATCCTCTGTTT
AAACATTTTCATAGTGTAGACATTCAGGCATCAGAAATTGTTGAATATGAAGAAGACGCACACATAACTT
TTGCTATATTGGATGCAGTAAATGGAAATATAGAAGATGCTGTGACTGCTTTTGAATCTATAAAAAGTGT
TGTTTCTTATTGGAATCTTGCACTGATTTTTCACAGGAAGGCAGAAGACATTGAAAATGATGCCCTTTCT
CCTGAAGAACAAGAAGAATGCAGAAATTATCTGACAAAGACCAGGGACTACCTAATAAAGATTATAGATG
ACGGTGATTCAAATCTTTCAGTGGTCAAGAAATTGCCTGTGCCCCTGGAGTCTGTAAAACAGATGCTTAA
TTCAGTCATGCAGGAACTCGAAGACTATAGTGAAGGAGGTCCTCTCTATAAAAATGGTTCTTTGCGAAAT
GCAGATTCAGAAATAAAACATTCTACACCGTCTCCTACCAAATATTCACTATCACCAAGTAAAAGTTACA
AGTATTCTCCCGAAACACCACCTCGATGGACAGAAGATCGGAATTCTTTACTGAATATGATTTGCCAACA
AGTAGAGGCCATTAAGAAAGAAATGCAGGAGTTGAAACTAAATAGCAGTAAGTCAGCATCCCGTCATCGT
TGGCCCACAGAGAATTATGGACCAGACTCGGTGCCTGATGGATATCAGGGGTCACAGACATTTCATGGGG
CTCCACTAACAGTTGCAACTACTGGCCCTTCAGTATATTATAGTCAGTCACCAGCATATAATTCCCAGTA
TCTTCTCAGACCAGCAGCTAATGTTACTCCCACAAAGGGTTCTTCTAATACAGAATTTAAGTCAACCAAA
GAAGGATTTTCCATCCCTGTGTCTGCTGATGGATTTAAATTTGGCATTTCGGAACCAGGAAATCAAGAAA
AGAAAAGGGAAAAGCCTCTTGAAAATGATACTGGCTTACAGGCTCAGGATATTAGGGGCCGGAAGAAGGG
CCGTGGTGTGATTTTTGGCCAAACAAGTAGCACTTTTACATTTGCAGATGTTGCAAAATCAACTTCAGGA
GAAGGATTTCAGTTTGGCAAAAAAGACCTCAATTTCAAGGGATTTTCAGGTGCTGGAGAAAAATTATTCT
CATCACGATACGGTAAAATGGCCAATAAAGCAAACACTTCCGGTGACTTTGAGAAAGATGATGATGCCTA
TAAGACTGAGGACAGCGATGACATCCATTTTGAACCAGTAGTTCAAATGCCTGAAAAAGTAGAACTTGTA
ACAGGAGAAGAAGGTGAAAAAGTTCTGTATTCACAGGGGGTAAAACTATTTAGATTTGATGCTGAGGTAA
GGCAGTGGAAAGAAAGGGGCTTGGGGAACTTAAAAATTCTCAAAAACGAGGTCAATGGCAAACTAAGAAT
GCTGATGCGAAGAGAACAAGTACTAAAAGTGTGTGCTAATCATTGGATAACGACTACAATGAACCTGAAG
CCCCTCTCTGGATCAGATAGAGCATGGATGTGGTCAGCCAGTGATTTCTCTGATGGTGATGCCAAACTAG
AGCGGTTGGCAGCAAAATTTAAAACACCAGAGCTGGCTGAAGAATTCAAGCAGAAATTTGAGGAATGCCA
GCGGCTTCTGTTAGACATACCACTTCAAACTCCCCATAAACTTGTAGATACTGGCAGAGCTGCCAAGTTA
ATACAGAGAGCTGAAGAAATGAAGAGTGGACTGAAAGATTTCAAAACATTTTTGACAAATGATCAAACAA
AAGTCACTGAGGAAGAAAATAAGGGTTCAGGTACAGGTGTGGCCGGTGCCTCAGACACAACAATAAAACC
CAATGCTGAAAACACTGGGCCCACATTAGAATGGGATAACTATGACTTAAGGGAAGATGCTTTGGATGAT
AGTGTCAGTAGTAGCTCAGTACATGCTTCTCCATTGGCAAGTAGCCCTGTGAGAAAAAATCTTTTCCGCT
TTGATGAGTCAACAACAGGATCTAACTTCAGTTTTAAATCTGCTTTGAGTCTATCTAAGTCTCCTGCCAA
GTTGAATCAGAGTGGGACTTCAGTTGGCACTGATGAAGAATCTGTTGTTACTCAAGAAGAAGAGAGAGAT
GGACAGTACTTTGAACCTGTTGTTCCTTTACCTGATCTAGTTGAAGTATCCAGTGGTGAGGAAAATGAAC
AAGTTGTTTTTAGTCACAGGGCAGAAATCTACAGATATGATAAAGATGTTGGTCAATGGAAAGAAAGGGG
CATTGGTGATATAAAGATTTTACAGAATTATGATAATAAGCAAGTTCGTATAGTGATGAGAAGGGACCAA
GTATTAAAACTTTGTGCCAATCACAGAATAACTCCAGACATGAGTTTGCAAAATATGAAAGGGACAGAAA
GAGTATGGGTGTGGACTGCATGTGATTTTGCAGATGGAGAAAGAAAAGTAGAGCATTTAGCTGTTCGTTT
TAAACTACAGGATGTTGCAGACTCGTTTAAGAAAATTTTTGATGAAGCAAAAACAGCCCAGGAAAAAGAT
TCTTTGATAACACCTCATGTTTCTCGGTCAAGCACTCCCAGAGAGTCACCATGTGGCAAAATTGCTGTAG
CTGTATTAGAAGAAATCACAAGAGAGAGGACAGATGTTATTCAGGGTGATGATGTAGCAGATGCAGCTTC
AGAAGTTGAAGTGTCTAGCACATCTGAAACAACAACAAAAGCAGTGGTTTCTCCTCCAAAGTTTGTATTT
GTTTCAGAGTCTGTTAAAAGAATTTTTAGTAGTGAAAAATCAAAACCATTTGCATTTGGCAACAGTTCTG
CCACTGGGTCTTTGTTTGGATTTAGTTTTAATGCACCTTTGAAAAGTAACAATAGTGAAACTAGTTCAGT
AGCCCAGAGTGGATCTGAAAGCAAAGTGGAACCTAAAAAATGTGAACTGTCAAAGAACTCTGATATCGAA
CAGTCTTCAGATAGCAAAGTCAAAAATCTCTCTGCTTCCTTTCCAACGGAAGAATCTTCAATCAACTACA
CATTTAAAACACCAGAAAAGGAGCCTCCATTATGGCATGCTGAATTTACCAAAGAAGAATTGGTTCAGAA
GCTCCGTTCCACCACAAAAAGTGCAGATCACTTAAACGGCCTGCTTCGGGAAATAGAGGCAACCAATGCA
GTCCTTATGGAGCAAATTAAGCTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGCGAGAGA
AGTCTGCAGCTAACCTGGAATACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGA
AAGAGAGAGACTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCT
GCGGTTGCTCAAGATGAGGAAGAAAATCCTTCCCGTTCTTCTGGATGA

Translation (1765 aa):
MRRSKADVERYVASVLGLTPSPRQKSMKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY
ELEENTEKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEQLLD
CEGEDGWNKLFDLIQSELYVRPDDVHVNIRLVELYRSTKRLKDAVAHCHEAERNIALRSSLEWNSCVVQT
LKEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQENRELLESFDSALQSAKSSLGGNDELS
ATFLEMKGHFYMYAGSLLLKMGQHGNNVQWRALSELAALCYLIAFQVPRPKIKLREGKAGQNLLEMMACD
RLSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKIDVQEPELEDL
ARYDVGAIRAHNGSLQHLTWLGLQWNSLPALPGIRKWLKQLFHRLPHETSRLETNAPESICILDLEVFLL
GVVYTSHLQLKEKCNSHHSSYQPLCLPFPVCKQLCTERQKSWWDAVCTLIHRKAVPGNLAKLRLLVQHEI
NTLRAQEKHGLQPALLVHWAKYLQKTGSGLNSFYGQLEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLF
KHFHSVDIQASEIVEYEEDAHITFAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALS
PEEQEECRNYLTKTRDYLIKIIDDGDSNLSVVKKLPVPLESVKQMLNSVMQELEDYSEGGPLYKNGSLRN
ADSEIKHSTPSPTKYSLSPSKSYKYSPETPPRWTEDRNSLLNMICQQVEAIKKEMQELKLNSSKSASRHR
WPTENYGPDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTK
EGFSIPVSADGFKFGISEPGNQEKKREKPLENDTGLQAQDIRGRKKGRGVIFGQTSSTFTFADVAKSTSG
EGFQFGKKDLNFKGFSGAGEKLFSSRYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELV
TGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLK
PLSGSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRAAKL
IQRAEEMKSGLKDFKTFLTNDQTKVTEEENKGSGTGVAGASDTTIKPNAENTGPTLEWDNYDLREDALDD
SVSSSSVHASPLASSPVRKNLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERD
GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ
VLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD
SLITPHVSRSSTPRESPCGKIAVAVLEEITRERTDVIQGDDVADAASEVEVSSTSETTTKAVVSPPKFVF
VSESVKRIFSSEKSKPFAFGNSSATGSLFGFSFNAPLKSNNSETSSVAQSGSESKVEPKKCELSKNSDIE
QSSDSKVKNLSASFPTEESSINYTFKTPEKEPPLWHAEFTKEELVQKLRSTTKSADHLNGLLREIEATNA
VLMEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLA
AVAQDEEENPSRSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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