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Report for CCDS46017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46017.1 Public Homo sapiens 19 IQCN 24 110 108 CCDS HistoryNCBI Gene:80726Re-query CCDS DB by CCDS ID:46017.1Re-query CCDS DB by GeneID:80726See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392413.5 ENSP00000376213.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392413.5Link to Ensembl Protein Viewer:ENSP00000376213.2Re-query CCDS DB by Nucleotide ID:ENST00000392413Re-query CCDS DB by Protein ID:ENSP00000376213
Original member Current member NCBI NM_001145304.2 NP_001138776.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145304.2Link to Protein Sequence:NP_001138776.1Re-query CCDS DB by Nucleotide ID:NM_001145304Re-query CCDS DB by Protein ID:NP_001138776Link to BLAST:NP_001138776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138776.1 1367 Q9H0B3-4 1367 100% 0 0

Chromosomal Locations for CCDS 46017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18257180 18258106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18264363 18267526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18269466 18269478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4104 nt):
ATGACCCTTCAAGGCAGAGCTGACCTGTCCGGTAATCAAGGCAATGCAGCCGGCCGCCTAGCTACAGTTC
ACGAGCCAGTTGTCACCCAGTGGGCGGTGCATCCTCCAGCCCCCGCTCACCCCAGTCTCCTGGACAAAAT
GGAGAAAGCGCCTCCACAGCCCCAGCACGAGGGCCTCAAGTCCAAGGAGCATCTTCCGCAACAGCCTGCC
GAAGGCAAGACGGCGTCCCGCCGCGTCCCACGCCTCCGGGCTGTGGTCGAGAGCCAGGCCTTCAAGAACA
TCCTGGTAGACGAGATGGACATGATGCACGCCCGTGCAGCCACGCTCATCCAAGCCAACTGGAGGGGCTA
TTGGCTCCGGCAGAAGCTGATTTCCCAGATGATGGCGGCCAAGGCCATCCAGGAGGCCTGGCGGCGCTTC
AACAAGAGACACATCCTTCACTCCAGCAAGTCGTTGGTAAAGAAAACGAGGGCGGAGGAGGGGGACATAC
CTTATCACGCCCCACAGCAGGTGCGCTTCCAGCATCCGGAAGAGAACCGCCTTCTGTCCCCGCCCATCAT
GGTGAACAAGGAGACCCAGTTCCCTTCCTGTGACAATCTGGTCCTCTGCAGACCCCAGTCGTCCCCCCTC
CTGCAGCCCCCAGCAGCTCAGGGTACCCCAGAGCCCTGTGTGCAGGGTCCTCATGCTGCCAGAGTCCGGG
GGCTGGCCTTCCTGCCACACCAGACGGTCACCATCAGATTTCCCTGCCCAGTGAGTCTGGACGCAAAATG
CCAGCCATGCCTGCTGACCAGAACCATCAGAAGCACCTGCCTCGTCCACATAGAGGGTGACTCAGTGAAG
ACCAAACGTGTAAGTGCCCGGACCAACAAAGCCAGGGCTCCGGAGACACCATTGTCCAGAAGGTATGACC
AGGCAGTTACGAGACCATCCAGAGCCCAAACCCAGGGCCCTGTGAAAGCAGAGACCCCCAAAGCCCCCTT
CCAGATATGTCCAGGGCCCATGATCACCAAGACTCTACTCCAGACATATCCAGTGGTCTCCGTGACCCTG
CCACAGACATATCCAGCGTCCACGATGACCACCACCCCACCCAAGACTAGCCCAGTTCCCAAAGTAACAA
TAATCAAGACCCCAGCCCAGATGTATCCGGGGCCCACAGTGACCAAAACTGCACCTCACACATGCCCCAT
GCCCACAATGACCAAGATCCAGGTACACCCCACAGCCTCCAGAACTGGCACCCCACGGCAGACATGCCCT
GCGACCATCACGGCAAAGAACCGACCTCAGGTTTCCCTTCTGGCTTCCATCATGAAGAGCCTGCCCCAGG
TATGCCCGGGGCCTGCGATGGCAAAGACCCCACCCCAGATGCACCCGGTCACCACCCCAGCCAAAAACCC
ATTGCAAACATGTCTGTCAGCCACAATGTCCAAGACTTCATCCCAGAGGAGCCCAGTTGGGGTGACCAAG
CCCTCACCCCAGACCCGCCTGCCAGCCATGATAACCAAGACCCCAGCCCAGTTACGCTCGGTGGCCACCA
TCCTCAAGACTCTGTGTCTGGCCTCTCCAACAGTGGCAAATGTCAAGGCTCCACCCCAAGTGGCGGTAGC
AGCCGGAACTCCCAACACCTCAGGCTCCATCCATGAGAACCCACCCAAGGCCAAGGCCACCGTGAATGTG
AAGCAGGCTGCAAAGGTGGTGAAAGCCTCATCCCCCTCCTATTTGGCTGAGGGGAAGATCAGGTGCCTGG
CTCAACCACATCCGGGAACTGGGGTCCCCAGGGCTGCAGCTGAGCTTCCTTTGGAAGCCGAGAAAATCAA
GACTGGCACCCAGAAACAGGCGAAAACAGACATGGCATTTAAGACCAGTGTGGCAGTGGAAATGGCTGGG
GCTCCATCCTGGACAAAAGTTGCTGAGGAAGGGGACAAGCCACCTCACGTGTATGTGCCTGTAGACATGG
CTGTCACCCTGCCCCGGGGACAGCTGGCTGCCCCACTGACCAATGCCTCATCCCAGAGACATCCACCCTG
CCTGTCCCAGAGACCACTGGCCGCCCCGCTGACCAAGGCCTCATCTCAGGGACATCTGCCCACTGAGCTG
ACCAAGACCCCATCCCTGGCCCATCTGGACACCTGTCTGAGCAAGATGCATTCCCAGACACATCTGGCCA
CAGGTGCCGTGAAGGTCCAGTCCCAAGCGCCTCTAGCCACCTGTCTGACCAAGACGCAGTCCCGGGGGCA
GCCGATCACAGACATAACCACGTGCCTCATCCCAGCGCACCAGGCTGCTGATCTCAGCAGCAACACCCAC
TCCCAGGTGCTCCTAACAGGGTCCAAGGTGTCCAACCACGCCTGCCAGCGCCTCGGTGGCCTCAGCGCCC
CACCCTGGGCCAAGCCAGAGGACAGACAGACCCAGCCACAGCCCCACGGACACGTGCCGGGGAAGACCAC
TCAGGGGGGACCATGCCCGGCAGCCTGTGAGGTCCAGGGTATGCTGGTGCCGCCGATGGCACCCACCGGC
CATTCCACATGCAACGTTGAGTCCTGGGGAGACAACGGAGCCACACGTGCCCAGCCATCAATGCCCGGCC
AGGCGGTGCCCTGCCAGGAGGACACGGTAGGCTCCCTGCTGGCCTCCTTGTGTGCTGAAGTAGCTGGTGT
GCTGGCATCCCAGGAGGATCTCCGCACTCTGTTGGCCAAAGCCCTCTCCCAGGGAGAAGTCTGGGCAGCT
CTGAACCAGGCCCTGTCCAAGGAGGTCCTGGGTGCCACTGTCACCAAAGCCCTGCCCCAGAGCATGCTGA
GCATGGCGCTGGTGAAGGCGCTGTCCTGGAGTGAGCTGCGCCTGACCCTGTCCCGAGCCCTGTCCCGGGG
CGAGCTGCGGGCGGAACTCACCAAGGTCATGCAGGGTAAATTGGCCGAGGTGCTTAGCAAGGCTTTGACG
GAGGAGGAGTGGGTGGCTCTGAGCCAGGCCCTGTGTCAGGGTGAGCTGGGTGCTCTCCTGAGCCAGTCTT
GGTGTCGGGTGGCCCTGAGGACTGGAACCATCCTCCCCAAGGCCGCCTCGAAATCAACAGGAAGCGGGGT
GACTAAGACGCCGGCCCTGGTGAAGGTGGCCTGCAGGAGGAGTCCATCGGCCGCATGGGGGCCCTCCCTG
GGCCCCGTGAGACCACAGACCAGCAAGGGCCCCGCGGACGCTGGTGTGGTTGGTGGCCAATCGTGGAACC
GCGCATGGGAGCCAGCCAGGGGTGCTGCGTCCTGGGACACCTGGCGCAACAAGGCGGTGGTGCCTCCCAG
GCGGTCCGGGGAGCCAATGGTGTCCATGCAGGCTGCAGAGGAGATCCGCATCCTCGCAGTGATCACTATC
CAGGCGGGCGTCCGTGGCTACCTGGCGCGTCGCAGGATCCGGCTGTGGCACCGGGGGGCCATGGTCATCC
AAGCTACTTGGCGCGGCTACCGTGTGCGGCGGAACCTGGCACACCTCTGCAGAGCCACCACGACCATCCA
GTCTGCCTGGCGCGGCTACAGCACCCGCCGGGACCAAGCCCGGCACTGGCAGATGCTCCACCCCGTCACG
TGGGTGGAGCTGGGCAGCCGGGCCGGGGTCATGTCTGACCGAAGCTGGTTCCAGGATGGCAGAGCCAGGA
CAGTATCTGACCATCGCTGCTTCCAGTCCTGCCAGGCACACGCTTGCAGCGTCTGCCACTCCCTGAGCTC
CAGGATCGGGAGCCCGCCCAGCGTGGTGATGCTAGTGGGCTCCAGCCCTCGCACCTGTCATACCTGTGGA
CGCACACAGCCCACCCGTGTGGTGCAGGGCATGGGCCAGGGCACTGAGGGCCCCGGGGCAGTGTCTTGGG
CCTCCGCCTACCAGCTGGCTGCCCTGAGTCCCAGGCAGCCGCATCGCCAGGACAAAGCGGCCACAGCCAT
CCAGTCCGCCTGGAGGGGCTTTAAGATCCGCCAGCAGATGAGGCAGCAGCAAATGGCAGCGAAGATAGTT
CAAGCCACCTGGCGAGGCCACCATACCCGGAGCTGTCTGAAGAACACAGAGGCGCTCTTGGGACCAGCAG
ACCCCTCGGCCAGCTCACGGCACATGCATTGGCCTGGCATCTAG

Translation (1367 aa):
MTLQGRADLSGNQGNAAGRLATVHEPVVTQWAVHPPAPAHPSLLDKMEKAPPQPQHEGLKSKEHLPQQPA
EGKTASRRVPRLRAVVESQAFKNILVDEMDMMHARAATLIQANWRGYWLRQKLISQMMAAKAIQEAWRRF
NKRHILHSSKSLVKKTRAEEGDIPYHAPQQVRFQHPEENRLLSPPIMVNKETQFPSCDNLVLCRPQSSPL
LQPPAAQGTPEPCVQGPHAARVRGLAFLPHQTVTIRFPCPVSLDAKCQPCLLTRTIRSTCLVHIEGDSVK
TKRVSARTNKARAPETPLSRRYDQAVTRPSRAQTQGPVKAETPKAPFQICPGPMITKTLLQTYPVVSVTL
PQTYPASTMTTTPPKTSPVPKVTIIKTPAQMYPGPTVTKTAPHTCPMPTMTKIQVHPTASRTGTPRQTCP
ATITAKNRPQVSLLASIMKSLPQVCPGPAMAKTPPQMHPVTTPAKNPLQTCLSATMSKTSSQRSPVGVTK
PSPQTRLPAMITKTPAQLRSVATILKTLCLASPTVANVKAPPQVAVAAGTPNTSGSIHENPPKAKATVNV
KQAAKVVKASSPSYLAEGKIRCLAQPHPGTGVPRAAAELPLEAEKIKTGTQKQAKTDMAFKTSVAVEMAG
APSWTKVAEEGDKPPHVYVPVDMAVTLPRGQLAAPLTNASSQRHPPCLSQRPLAAPLTKASSQGHLPTEL
TKTPSLAHLDTCLSKMHSQTHLATGAVKVQSQAPLATCLTKTQSRGQPITDITTCLIPAHQAADLSSNTH
SQVLLTGSKVSNHACQRLGGLSAPPWAKPEDRQTQPQPHGHVPGKTTQGGPCPAACEVQGMLVPPMAPTG
HSTCNVESWGDNGATRAQPSMPGQAVPCQEDTVGSLLASLCAEVAGVLASQEDLRTLLAKALSQGEVWAA
LNQALSKEVLGATVTKALPQSMLSMALVKALSWSELRLTLSRALSRGELRAELTKVMQGKLAEVLSKALT
EEEWVALSQALCQGELGALLSQSWCRVALRTGTILPKAASKSTGSGVTKTPALVKVACRRSPSAAWGPSL
GPVRPQTSKGPADAGVVGGQSWNRAWEPARGAASWDTWRNKAVVPPRRSGEPMVSMQAAEEIRILAVITI
QAGVRGYLARRRIRLWHRGAMVIQATWRGYRVRRNLAHLCRATTTIQSAWRGYSTRRDQARHWQMLHPVT
WVELGSRAGVMSDRSWFQDGRARTVSDHRCFQSCQAHACSVCHSLSSRIGSPPSVVMLVGSSPRTCHTCG
RTQPTRVVQGMGQGTEGPGAVSWASAYQLAALSPRQPHRQDKAATAIQSAWRGFKIRQQMRQQQMAAKIV
QATWRGHHTRSCLKNTEALLGPADPSASSRHMHWPGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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