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Report for CCDS45946.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45946.2 Public Homo sapiens 19 ARHGEF18 24 110 108 CCDS HistoryNCBI Gene:23370Re-query CCDS DB by CCDS ID:45946.2Re-query CCDS DB by GeneID:23370See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 45946.1
The coding region has been updated to start at a downstream start codon that is supported by conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45946.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359920.11 ENSP00000352995.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359920.11Link to Ensembl Protein Viewer:ENSP00000352995.5Re-query CCDS DB by Nucleotide ID:ENST00000359920Re-query CCDS DB by Protein ID:ENSP00000352995
Original member Current member NCBI NM_001130955.2 NP_001124427.2 Accepted alive Link to Nucleotide Sequence:NM_001130955.2Link to Protein Sequence:NP_001124427.2Re-query CCDS DB by Nucleotide ID:NM_001130955Re-query CCDS DB by Protein ID:NP_001124427Link to BLAST:NP_001124427.2

Chromosomal Locations for CCDS 45946.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7440103 7440482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7441653 7441765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7441912 7442052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7444204 7444454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7447043 7447168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7451149 7451266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7453467 7453715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7456327 7456403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7458512 7458690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7459903 7459994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7462152 7462334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7463818 7463955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7464560 7464690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7466918 7466974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7467071 7467118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7467214 7467684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7468825 7469131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7469904 7470029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7470126 7470298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3360 nt):
ATGGGGAATGCGCACTCCAAAAGCGGGGACAGGCACAGCGCGCTCCCCGGCCGCCCCGAGCTGTCTTTTT
ACGGCTCTTTCCCCAGGAAATGGAGCGAGAACGTCTTCTTGGATAACGAGCTGCTGACCTCCAAGATCCT
GTCTGTGCTGCGGCCGCAGTCGGAGCGGGGCTTCCGCGCCGGGGACCTCCGCTACCCGACCCACTTTCTC
AGCACCAACTCTGTCCTTGCCTCTGTCACAGCCTCGCTCAAGGAGCACCCCCGGGGCACCCTCCTGTCCG
ATGGCAGCCCGGCCCTGTCCAGGAATGTCGGTATGACGGTCTCTCAGAAAGGGGGTCCCCAGCCAACACC
GAGCCCGGCTGGCCCTGGGACGCAACTCGGACCAATCACAGGAGAGATGGATGAAGCCGATTCTGCGTTT
TTAAAATTTAAGCAGACAGCTGATGACTCTCTGTCCCTTACATCTCCAAACACCGAGTCCATTTTTGTAG
AAGATCCCTACACCGCCTCGCTGAGGAGTGAGATTGAGTCAGACGGCCACGAGTTTGAAGCTGAGTCCTG
GAGCCTCGCCGTGGATGCAGCCTACGCCAAGAAGCAAAAGAGGGAGGTGGTGAAAAGACAAGATGTCCTT
TATGAGCTGATGCAGACAGAGGTGCACCACGTGCGGACGCTCAAGATCATGCTGAAGGTGTACTCCAGGG
CCCTGCAGGAGGAGCTGCAGTTCAGCAGCAAGGCCATTGGCCGCCTCTTCCCATGCGCTGACGACCTGCT
GGAGACGCACAGCCACTTCCTCGCTCGGCTCAAGGAGCGCCGCCAGGAGTCCCTGGAGGAGGGCAGTGAC
CGGAATTATGTCATCCAGAAAATCGGCGACCTCCTGGTTCAGCAGTTTTCAGGTGAAAATGGGGAGAGAA
TGAAAGAAAAGTACGGTGTGTTTTGTAGTGGCCACAATGAAGCTGTTAGTCATTACAAGTTGCTGCTTCA
GCAAAACAAGAAATTTCAAAACTTGATCAAGAAAATTGGCAACTTCTCCATCGTGCGGCGGCTTGGCGTG
CAGGAGTGCATTCTCCTGGTTACACAACGCATAACCAAATACCCAGTGCTGGTGGAGCGCATCATCCAGA
ACACGGAAGCTGGCACTGAGGACTATGAAGACCTGACCCAGGCCTTGAACCTCATCAAAGATATCATCTC
ACAAGTGGACGCCAAGGTCAGTGAGTGTGAGAAGGGCCAGCGCCTCAGGGAGATCGCAGGGAAGATGGAC
CTGAAGTCTTCCAGCAAACTCAAGAACGGGCTCACCTTCCGCAAGGAAGACATGCTTCAGCGGCAGCTCC
ACCTGGAGGGCATGCTATGCTGGAAGACCACATCAGGGCGCTTGAAAGATATCCTGGCTATCCTGCTGAC
CGACGTACTTTTGCTGCTACAAGAAAAAGATCAGAAATACGTCTTTGCTTCTGTGGACTCAAAGCCACCC
GTCATCTCGTTACAAAAGCTCATCGTGAGGGAAGTGGCCAACGAGGAGAAAGCGATGTTTCTGATCAGCG
CCTCCTTGCAAGGGCCGGAGATGTATGAAATCTACACGAGCTCCAAAGAGGACAGGAACGCCTGGATGGC
CCACATCCAAAGGGCTGTGGAGAGCTGCCCTGACGAGGAGGAGGGGCCCTTCAGCCTGCCCGAAGAGGAA
AGGAAGGTGGTCGAGGCCCGCGCCACGAGACTCCGGGACTTTCAAGAGCGGTTGAGCATGAAAGACCAGC
TGATCGCACAGAGCCTCCTAGAGAAACAGCAGATCTACCTGGAGATGGCCGAGATGGGCGGCCTCGAAGA
CCTGCCCCAGCCCCGAGGCCTATTCCGTGGAGGGGACCCATCCGAGACCCTGCAGGGGGAGCTAATTCTC
AAGTCGGCCATGAGCGAGATCGAGGGCATCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGCC
AGGCGGAAGACGGAGGCAGCTCCACAGGCCCGCCCAGGAGGGCTGAGACCTTCGCGGGCTACGACTGCAC
AAACAGCCCCACCAAGAATGGCAGTTTCAAGAAGAAAGTCAGCAGCACTGACCCCAGGCCCCGAGACTGG
CGAGGCCCCCCAAACAGCCCGGACTTGAAGCTCAGTGACAGTGACATTCCTGGGAGCTCTGAGGAATCGC
CGCAGGTGGTGGAGGCGCCAGGCACGGAATCCGATCCCCGTCTGCCCACCGTCCTGGAGTCGGAGCTTGT
CCAGCGGATCCAGACACTGTCCCAGCTGCTCCTGAACCTTCAGGCGGTAATCGCCCACCAGGACAGCTAT
GTGGAGACGCAGCGGGCTGCCATCCAGGAGCGGGAGAAGCAGTTCCGGCTGCAGTCGACGCGTGGGAACC
TGCTGCTGGAGCAGGAGCGGCAACGCAACTTCGAGAAGCAGCGGGAGGAGCGCGCGGCCCTGGAGAAGCT
GCAGAGCCAGCTGCGGCACGAGCAGCAGCGCTGGGAGCGCGAGCGCCAGTGGCAGCACCAGGAGCTGGAG
CGTGCGGGCGCGCGGCTGCAGGAGCGCGAGGGCGAGGCGCGGCAGCTACGCGAGCGGCTGGAGCAGGAGC
GGGCCGAGCTGGAGCGCCAGCGCCAGGCCTACCAGCACGACCTGGAGCGGCTGCGCGAGGCCCAGCGTGC
CGTGGAGCGCGAGCGGGAGCGCCTGGAGCTGCTGCGCCGCCTCAAGAAGCAGAACACCGCGCCAGGCGCG
CTGCCGCCCGACACACTGGCCGAGGCCCAGCCCCCAAGCCACCCTCCCAGCTTCAACGGGGAAGGGCTGG
AGGGCCCTCGTGTGAGCATGCTGCCATCCGGCGTGGGGCCAGAGTACGCAGAGCGCCCCGAGGTGGCTCG
CCGGGACAGCGCCCCCACCGAGAACCGGCTGGCCAAGAGCGATGTGCCCATCCAGCTGCTCAGCGCCACC
AACCAGTTCCAGAGGCAGGCGGCCGTGCAGCAGCAGATCCCCACCAAGCTGGCGGCCTCCACCAAGGGTG
GCAAGGACAAGGGCGGCAAGAGCAGGGGCTCTCAGCGCTGGGAGAGCTCAGCGTCCTTCGACCTGAAGCA
GCAGCTGCTGCTCAACAAGCTCATGGGGAAAGATGAGAGCACCTCACGGAACCGCCGCTCGCTGAGCCCT
ATCCTGCCCGGCAGACACAGTCCTGCGCCCCCACCAGACCCTGGCTTCCCCGCCCCGAGCCCACCGCCAG
CTGACAGCCCCTCCGAGGGCTTCTCTCTCAAGGCCGGGGGCACAGCCCTCCTGCCCGGGCCCCCAGCTCC
CTCGCCACTGCCGGCCACACCACTCAGCGCCAAGGAGGACGCCAGCAAAGAAGACGTCATCTTCTTCTAA

Translation (1119 aa):
MGNAHSKSGDRHSALPGRPELSFYGSFPRKWSENVFLDNELLTSKILSVLRPQSERGFRAGDLRYPTHFL
STNSVLASVTASLKEHPRGTLLSDGSPALSRNVGMTVSQKGGPQPTPSPAGPGTQLGPITGEMDEADSAF
LKFKQTADDSLSLTSPNTESIFVEDPYTASLRSEIESDGHEFEAESWSLAVDAAYAKKQKREVVKRQDVL
YELMQTEVHHVRTLKIMLKVYSRALQEELQFSSKAIGRLFPCADDLLETHSHFLARLKERRQESLEEGSD
RNYVIQKIGDLLVQQFSGENGERMKEKYGVFCSGHNEAVSHYKLLLQQNKKFQNLIKKIGNFSIVRRLGV
QECILLVTQRITKYPVLVERIIQNTEAGTEDYEDLTQALNLIKDIISQVDAKVSECEKGQRLREIAGKMD
LKSSSKLKNGLTFRKEDMLQRQLHLEGMLCWKTTSGRLKDILAILLTDVLLLLQEKDQKYVFASVDSKPP
VISLQKLIVREVANEEKAMFLISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESCPDEEEGPFSLPEEE
RKVVEARATRLRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLEDLPQPRGLFRGGDPSETLQGELIL
KSAMSEIEGIQSLICRQLGSANGQAEDGGSSTGPPRRAETFAGYDCTNSPTKNGSFKKKVSSTDPRPRDW
RGPPNSPDLKLSDSDIPGSSEESPQVVEAPGTESDPRLPTVLESELVQRIQTLSQLLLNLQAVIAHQDSY
VETQRAAIQEREKQFRLQSTRGNLLLEQERQRNFEKQREERAALEKLQSQLRHEQQRWERERQWQHQELE
RAGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRLKKQNTAPGA
LPPDTLAEAQPPSHPPSFNGEGLEGPRVSMLPSGVGPEYAERPEVARRDSAPTENRLAKSDVPIQLLSAT
NQFQRQAAVQQQIPTKLAASTKGGKDKGGKSRGSQRWESSASFDLKQQLLLNKLMGKDESTSRNRRSLSP
ILPGRHSPAPPPDPGFPAPSPPPADSPSEGFSLKAGGTALLPGPPAPSPLPATPLSAKEDASKEDVIFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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