NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45935.1 Public Homo sapiens 19 RANBP3 24 110 108 CCDS HistoryNCBI Gene:8498Re-query CCDS DB by CCDS ID:45935.1Re-query CCDS DB by GeneID:8498See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439268.6 ENSP00000404837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439268.6Link to Ensembl Protein Viewer:ENSP00000404837.1Re-query CCDS DB by Nucleotide ID:ENST00000439268Re-query CCDS DB by Protein ID:ENSP00000404837
Original member Current member NCBI NM_003624.3 NP_003615.2 Accepted alive Link to Nucleotide Sequence:NM_003624.3Link to Protein Sequence:NP_003615.2Re-query CCDS DB by Nucleotide ID:NM_003624Re-query CCDS DB by Protein ID:NP_003615Link to BLAST:NP_003615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003615.2 562 Q9H6Z4-2 562 100% 0 0

Chromosomal Locations for CCDS 45935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5917610 5917653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5917794 5917980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5918496 5918638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5921201 5921321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5923194 5923303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5923812 5923914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5924827 5924905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5925634 5925737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5927968 5928087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5931419 5931531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5932452 5932544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5933414 5933479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5941621 5941707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5941799 5941835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5951393 5951596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5957918 5957973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5978061 5978082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGCGGACCTGGCGAACGAAGAAAAGCCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAGGATAAAG
GACAAAAGTCCCCTGCAGAGCAAAAAAACTTGTCGGATTCGGGAGAGGAGCCTCGGGGGGAGGCTGAGGC
CCCCCACCATGGCACGGGTCACCCCGAGTCAGCTGGCGAGCATGCCCTAGAACCTCCTGCCCCTGCTGGC
GCCTCAGCCAGCACTCCTCCGCCTCCCGCTCCTGAAGCCCAGCTTCCTCCTTTTCCGCGAGAACTGGCAG
GGAGGTCAGCTGGCGGCTCCAGTCCTGAAGGCGGAGAAGATTCTGACAGAGAAGATGGAAATTACTGCCC
TCCTGTCAAGCGAGAAAGAACATCCTCTTTAACCCAGTTCCCACCCTCACAGTCAGAGGAAAGGAGCAGT
GGCTTCCGGTTGAAGCCACCAACGCTGATCCACGGCCAAGCCCCCAGCGCAGGTCTGCCAAGCCAGAAGC
CCAAGGAGCAGCAGCGGAGCGTGCTTCGCCCGGCAGTGTTACAAGCTCCGCAGCCAAAGGCGCTGTCCCA
GACTGTCCCCAGCAGTGGCACCAACGGGGTCAGCCTCCCAGCAGACTGCACGGGGGCAGTGCCCGCAGCA
TCCCCTGACACTGCTGCATGGAGAAGTCCTTCCGAAGCTGCCGATGAGGAGAAAGAGCCCCAGAAAAATG
AGTCCAGCAATGCCTCTGAAGAGGAAGCCTGTGAGAAAAAAGACCCCGCCACACAGCAAGCCTTTGTATT
TGGGCAGAACTTGAGGGACAGAGTTAAGCTGATAAATGAGAGCGTGGACGAAGCCGACATGGAGAATGCT
GGACACCCCAGCGCAGACACGCCAACCGCAACGAACTATTTCCTCCAGTATATCAGTTCCAGTTTAGAGA
ACTCAACCAATAGTGCCGACGCCTCCAGCAACAAATTTGTATTTGGCCAGAACATGAGCGAGCGAGTTTT
GAGCCCCCCAAAATTAAACGAGGTCAGTTCAGATGCCAACAGGGAAAATGCAGCTGCCGAGTCAGGGTCT
GAGTCCTCGTCCCAGGAGGCCACCCCTGAGAAAGAGTCCCTGGCTGAGTCGGCAGCCGCCTACACCAAGG
CAACAGCGCGGAAGTGTTTGTTGGAAAAAGTGGAAGTCATCACCGGGGAGGAGGCGGAGAGCAATGTGTT
ACAGATGCAGTGCAAGCTGTTTGTCTTTGACAAGACCTCACAGTCCTGGGTGGAGAGAGGCCGGGGGCTG
CTCAGACTCAATGACATGGCGTCCACCGATGACGGCACACTACAGTCCCGACTAGTGATGCGGACCCAGG
GGAGCCTGCGACTGATCCTCAACACCAAGCTGTGGGCCCAGATGCAGATCGACAAGGCCAGCGAGAAGAG
CATTCGCATCACAGCCATGGACACCGAGGACCAGGGCGTGAAGGTCTTCCTGATCTCGGCCAGCTCCAAG
GACACAGGTCAGTTGTATGCAGCCCTGCACCACCGCATCCTGGCCCTGCGCAGCCGCGTGGAGCAGGAGC
AGGAGGCCAAGATGCCCGCGCCTGAGCCTGGGGCAGCCCCATCCAACGAGGAGGACGACAGCGACGATGA
CGATGTCCTGGCTCCTTCAGGGGCCACCGCAGCTGGTGCTGGTGACGAAGGGGACGGGCAGACGACCGGG
AGCACATAG

Translation (562 aa):
MADLANEEKPAIAPPVFVFQKDKGQKSPAEQKNLSDSGEEPRGEAEAPHHGTGHPESAGEHALEPPAPAG
ASASTPPPPAPEAQLPPFPRELAGRSAGGSSPEGGEDSDREDGNYCPPVKRERTSSLTQFPPSQSEERSS
GFRLKPPTLIHGQAPSAGLPSQKPKEQQRSVLRPAVLQAPQPKALSQTVPSSGTNGVSLPADCTGAVPAA
SPDTAAWRSPSEAADEEKEPQKNESSNASEEEACEKKDPATQQAFVFGQNLRDRVKLINESVDEADMENA
GHPSADTPTATNYFLQYISSSLENSTNSADASSNKFVFGQNMSERVLSPPKLNEVSSDANRENAAAESGS
ESSSQEATPEKESLAESAAAYTKATARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGL
LRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISASSK
DTGQLYAALHHRILALRSRVEQEQEAKMPAPEPGAAPSNEEDDSDDDDVLAPSGATAAGAGDEGDGQTTG
ST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH