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Report for CCDS45701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45701.1 Public Homo sapiens 17 FAM171A2 24 110 108 CCDS HistoryNCBI Gene:284069Re-query CCDS DB by CCDS ID:45701.1Re-query CCDS DB by GeneID:284069See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45701.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293443.12 ENSP00000293443.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293443.12Link to Ensembl Protein Viewer:ENSP00000293443.6Re-query CCDS DB by Nucleotide ID:ENST00000293443Re-query CCDS DB by Protein ID:ENSP00000293443
Original member Current member NCBI NM_198475.3 NP_940877.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198475.3Link to Protein Sequence:NP_940877.2Re-query CCDS DB by Nucleotide ID:NM_198475Re-query CCDS DB by Protein ID:NP_940877Link to BLAST:NP_940877.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940877.2 826 A8MVW0 826 100% 0 0

Chromosomal Locations for CCDS 45701.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44353733 44355191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44355715 44355841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44355958 44356074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44356173 44356352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44356430 44356588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44359579 44359671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44359905 44360132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44363597 44363714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2481 nt):
ATGCCGCCGGCGAGTGGCCCCAGCGTCCTCGCGCGGCTGTTGCCGCTGCTGGGGCTGCTGCTCGGCAGCG
CCTCCCGGGCTCCCGGCAAGTCGCCGCCGGAGCCCCCCAGCCCGCAGGAGATCCTGATCAAGGTGCAGGT
GTATGTGAGCGGGGAGCTGGTGCCCCTGGCCCGGGCCTCAGTGGATGTGTTTGGGAACCGGACTCTGCTG
GCAGCTGGCACCACAGACTCAGAGGGTGTGGCCACCCTGCCCCTCAGTTATCGCTTGGGCACCTGGGTGC
TGGTCACTGCTGCCCGCCCTGGCTTCCTCACCAACTCTGTGCCCTGGCGTGTTGACAAGCTGCCCTTGTA
TGCGTCTGTCAGCCTCTACCTGCTCCCTGAGCGGCCGGCCACGCTCATCCTCTATGAGGACCTGGTGCAC
ATTCTCCTAGGCTCTCCCGGTGCCCGCTCCCAGCCCTTGGTGCAGTTCCAGCGCCGGGCTGCCCGCCTGC
CTGTCAGCTCCACCTACAGCCAGCTCTGGGCGTCACTTACGCCTGCCAGCACCCAGCAGGAAATGCGGGC
TTTCCCTGCCTTCCTGGGCACTGAGGCCTCCAGCTCAGGCAATGGCTCCTGGCTGGAGCTGATGCCCCTG
ACTGCTGTGAGCGTGCACCTGCTGACAGGTAATGGGACAGAGGTGCCGCTCTCAGGCCCCATTCACCTGT
CCCTGCCCGTGCCCTCCGAGACTCGTGCCCTCACCGTGGGCACCAGCATTCCAGCCTGGAGATTTGACCC
CAAGAGTGGGCTGTGGGTGCGCAATGGCACTGGTGTAATCCGGAAGGAAGGCCGGCAGCTCTACTGGACC
TTCGTCTCCCCCCAGCTGGGGTACTGGGTGGCCGCCATGGCCTCCCCCACGGCTGGGCTGGTCACCATCA
CGTCGGGCATCCAGGACATCGGCACCTACCACACCATCTTCTTGCTCACCATCCTGGCAGCCCTGGCCCT
GCTGGTGCTTATCCTGCTGTGTCTGCTCATCTACTACTGCCGGAGGCGCTGCCTGAAGCCGAGGCAACAG
CACCGCAAGCTGCAGCTCTCGGGGCCCTCTGACGGTAACAAACGAGACCAGGCCACCTCGATGTCCCAGC
TCCACCTCATCTGTGGGGGACCCCTGGAACCCGCCCCGTCGGGGGACCCCGAGGCTCCGCCTCCAGGCCC
CCTCCACTCGGCCTTCTCCAGCTCCCGGGACTTGGCCTCCTCCCGGGATGACTTCTTCCGCACCAAGCCG
CGCTCTGCCAGCCGCCCGGCCGCCGAGCCTTCGGGTGCCCGCGGGGGCGAGAGCGCCGGGCTCAAGGGCG
CTCGCTCGGCCGAGGGCCCCGGCGGGCTGGAGCCCGGCCTAGAGGAGCACCGGCGGGGGCCCTCGGGGGC
TGCGGCCTTCCTGCACGAGCCGCCCTCGCCGCCGCCGCCCTTCGACCACTACCTGGGCCACAAGGGGGCG
GCCGAGGGCAAGACCCCCGACTTCCTGCTGTCGCAGTCGGTGGACCAGCTGGCGCGGCCGCCGTCGCTGG
GCCAGGCGGGGCAGCTCATCTTCTGCGGCTCCATCGACCACCTCAAGGACAACGTCTACCGCAACGTCAT
GCCCACCCTGGTGATCCCCGCGCACTACGTGCGCCTCGGCGGCGAGGCGGGCGCCGCCGGCGTGGGCGAC
GAGCCGGCCCCGCCGGAGGGCACGGCACCCGGCCCGGCGCGCGCTTTTCCCCAGCCCGACCCCCAGCGCC
CGCAGATGCCGGGCCACTCGGGCCCGGGGGGCGAGGGCGGCGGGGGCGGCGGCGAGGGCTGGGGGGCCGG
GCGCGCGGCGCCCGTCAGTGGCTCAGTCACCATCCCTGTGCTATTCAACGAGTCCACCATGGCGCAGCTC
AACGGGGAGCTGCAGGCCCTGACCGAGAAGAAGCTGCTGGAACTGGGCGTGAAGCCGCACCCGCGCGCCT
GGTTCGTGTCCCTCGACGGGCGCTCCAACTCGCAAGTGCGCCACTCTTACATCGACCTGCAGGCGGGCGG
CGGGGCACGCAGCACCGACGCCAGCCTGGACTCGGGCGTAGATGTCCACGAGGCGCGGCCCGCGCGCCGC
CGGCCCGCGAGGGAGGAGCGGGAGCGCGCCCCGCCTGCCGCGCCGCCGCCGCCGCCCGCGCCCCCGCGCC
TGGCGCTCAGCGAGGACACGGAGCCCAGCAGCAGCGAGAGCCGCACGGGCCTCTGCTCTCCGGAGGACAA
CTCGCTGACGCCGCTGCTGGACGAGGTGGCGGCGCCCGAGGGCCGGGCGGCCACGGTACCCCGGGGGCGG
GGCCGCAGCCGCGGGGACAGCTCCCGCAGCAGCGCCAGCGAGCTGCGGCGCGACTCGCTCACCAGCCCGG
AGGACGAGCTGGGGGCGGAGGTGGGCGACGAGGCGGGAGACAAGAAGAGCCCGTGGCAGCGGCGGGAGGA
GCGGCCGCTGATGGTGTTCAACGTCAAGTAG

Translation (826 aa):
MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLL
AAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVH
ILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELMPL
TAVSVHLLTGNGTEVPLSGPIHLSLPVPSETRALTVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWT
FVSPQLGYWVAAMASPTAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQ
HRKLQLSGPSDGNKRDQATSMSQLHLICGGPLEPAPSGDPEAPPPGPLHSAFSSSRDLASSRDDFFRTKP
RSASRPAAEPSGARGGESAGLKGARSAEGPGGLEPGLEEHRRGPSGAAAFLHEPPSPPPPFDHYLGHKGA
AEGKTPDFLLSQSVDQLARPPSLGQAGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGD
EPAPPEGTAPGPARAFPQPDPQRPQMPGHSGPGGEGGGGGGEGWGAGRAAPVSGSVTIPVLFNESTMAQL
NGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGARSTDASLDSGVDVHEARPARR
RPAREERERAPPAAPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGR
GRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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