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Report for CCDS45700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45700.1 Public Homo sapiens 17 SLC25A39 24 110 108 CCDS HistoryNCBI Gene:51629Re-query CCDS DB by CCDS ID:45700.1Re-query CCDS DB by GeneID:51629See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377095.10 ENSP00000366299.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377095.10Link to Ensembl Protein Viewer:ENSP00000366299.4Re-query CCDS DB by Nucleotide ID:ENST00000377095Re-query CCDS DB by Protein ID:ENSP00000366299
Original member Current member NCBI NM_001143780.3 NP_001137252.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143780.3Link to Protein Sequence:NP_001137252.1Re-query CCDS DB by Nucleotide ID:NM_001143780Re-query CCDS DB by Protein ID:NP_001137252Link to BLAST:NP_001137252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137252.1 359 Q9BZJ4-1 359 100% 0 0

Chromosomal Locations for CCDS 45700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44320001 44320116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44320196 44320276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44320355 44320436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44320622 44320731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44321058 44321231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44321434 44321558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44321700 44321767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44322419 44322552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44322808 44322852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44323284 44323343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44323478 44323562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCTGACCAGGACCCTGCGGGCATCAGCCCCCTCCAGCAAATGGTGGCCTCAGGCACCGGGGCTGTGG
TTACCTCTCTCTTCATGACACCCCTGGACGTGGTGAAGGTTCGCCTGCAGTCTCAGCGGCCCTCCATGGC
CAGCGAGCTGATGCCTTCCTCCAGACTGTGGAGCCTCTCCTATACCAAATTGCCCTCCTCTCTCCAATCC
ACAGGGAAGTGCCTCCTGTATTGCAATGGTGTCCTGGAGCCTCTGTACCTGTGCCCAAATGGTGCCCGCT
GTGCCACCTGGTTTCAAGACCCTACCCGCTTCACTGGCACCATGGATGCCTTCGTGAAGATCGTGAGGCA
CGAGGGCACCAGGACCCTCTGGAGCGGCCTCCCCGCCACCCTGGTGATGACTGTGCCAGCTACCGCCATC
TACTTCACTGCCTATGACCAACTGAAGGCCTTCCTGTGTGGTCGAGCCCTGACCTCTGACCTCTACGCAC
CCATGGTGGCTGGCGCGCTGGCCCGCCTGGGCACCGTGACTGTGATCAGCCCCCTGGAGCTTATGCGGAC
AAAGCTGCAGGCTCAGCATGTGTCGTACCGGGAGCTGGGTGCCTGTGTTCGAACTGCAGTGGCTCAGGGT
GGCTGGCGCTCACTGTGGCTGGGCTGGGGCCCCACTGCCCTTCGAGATGTGCCCTTCTCAGCCCTGTACT
GGTTCAACTATGAGCTGGTGAAGAGCTGGCTCAATGGGTTCAGGCCGAAGGACCAGACTTCTGTGGGCAT
GAGCTTTGTGGCTGGTGGCATCTCAGGGACGGTGGCTGCAGTGCTGACTCTACCCTTTGACGTGGTAAAG
ACCCAACGCCAGGTCGCTCTGGGAGCGATGGAGGCTGTGAGAGTGAACCCCCTGCATGTGGACTCCACCT
GGCTGCTGCTGCGGAGGATCCGGGCCGAGTCGGGCACCAAGGGACTCTTTGCAGGCTTCCTTCCTCGGAT
CATCAAGGCTGCCCCCTCCTGTGCCATCATGATCAGCACCTATGAGTTCGGCAAAAGCTTCTTCCAGAGG
CTGAACCAGGACCGGCTTCTGGGCGGCTGA

Translation (359 aa):
MADQDPAGISPLQQMVASGTGAVVTSLFMTPLDVVKVRLQSQRPSMASELMPSSRLWSLSYTKLPSSLQS
TGKCLLYCNGVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAI
YFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELMRTKLQAQHVSYRELGACVRTAVAQG
GWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLNGFRPKDQTSVGMSFVAGGISGTVAAVLTLPFDVVK
TQRQVALGAMEAVRVNPLHVDSTWLLLRRIRAESGTKGLFAGFLPRIIKAAPSCAIMISTYEFGKSFFQR
LNQDRLLGG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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