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Report for CCDS45486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45486.1 Public Homo sapiens 16 RPGRIP1L 24 110 108 CCDS HistoryNCBI Gene:23322Re-query CCDS DB by CCDS ID:45486.1Re-query CCDS DB by GeneID:23322See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262135.9 ENSP00000262135.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262135.9Link to Ensembl Protein Viewer:ENSP00000262135.4Re-query CCDS DB by Nucleotide ID:ENST00000262135Re-query CCDS DB by Protein ID:ENSP00000262135
Original member Current member NCBI NM_001127897.4 NP_001121369.1 Accepted alive Link to Nucleotide Sequence:NM_001127897.4Link to Protein Sequence:NP_001121369.1Re-query CCDS DB by Nucleotide ID:NM_001127897Re-query CCDS DB by Protein ID:NP_001121369Link to BLAST:NP_001121369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121369.1 1235 Q68CZ1-2 1235 100% 0 0

Chromosomal Locations for CCDS 45486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 53602076 53602188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53605481 53605614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53610967 53611051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53619025 53619208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53636439 53636512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53637695 53637854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53641033 53641116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53641285 53641475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53645625 53646003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53648964 53649115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53652535 53652987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53656472 53656589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53657453 53657632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53658414 53658464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53658772 53658878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53664870 53665009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53671510 53671583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53672870 53673016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53675017 53675122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53686433 53686576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53687863 53687965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53692066 53692364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53696151 53696295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53700639 53700723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGTCTGGTCCAACTGATGAGACTGCAGGAGACTTGCCTGTGAAAGATACAGGTCTAAACCTCTTTGGAA
TGGGAGGGTTACAAGAAACTTCAACAACACGGACAATGAAGTCTCGCCAGGCAGTGTCACGTGTCAGTCG
TGAGGAACTGGAAGACAGATTTTTGCGTTTGCATGATGAGAACATTTTACTTAAACAGCATGCCCGCAAG
CAGGAGGATAAAATTAAAAGAATGGCCACCAAGTTAATACGGCTAGTTAATGACAAGAAAAGATATGAGC
GGGTTGGTGGCGGCCCCAAGCGGCTGGGACGAGATGTGGAAATGGAAGAAATGATTGAGCAGCTGCAAGA
GAAAGTTCATGAGCTTGAAAAACAAAATGAAACCCTCAAAAACAGACTGATTTCAGCCAAACAGCAACTT
CAAACCCAGGGTTACAGGCAAACTCCATACAATAATGTACAATCTCGTATTAACACTGGGCGTAGAAAAG
CAAATGAAAATGCTGGTTTACAGGAATGCCCCAGGAAAGGTATAAAATTCCAAGATGCAGATGTAGCAGA
AACTCCACATCCCATGTTTACAAAATATGGCAACAGTTTACTTGAAGAAGCCAGAGGAGAAATAAGAAAT
TTAGAAAACGTTATTCAGTCACAAAGAGGCCAGATAGAGGAGTTAGAGCACTTGGCTGAGATCCTGAAAA
CTCAGTTGAGGAGAAAAGAAAATGAAATTGAGTTATCTCTTCTTCAGCTTCGAGAACAGCAAGCTACAGA
TCAAAGGTCAAATATTCGGGACAATGTAGAAATGATTAAGCTTCATAAACAGCTAGTAGAGAAAAGCAAT
GCTCTTTCAGCAATGGAAGGAAAATTTATTCAGCTTCAAGAGAAGCAAAGAACTCTCAGAATCAGCCACG
ATGCTTTGATGGCAAATGGGGATGAATTAAACATGCAACTTAAAGAGCAGCGTTTAAAATGCTGCAGTCT
TGAGAAACAATTACATTCTATGAAGTTTTCTGAAAGAAGAATAGAAGAGCTGCAGGATAGAATTAATGAT
TTAGAAAAGGAACGGGAACTTTTAAAGGAAAACTATGATAAACTTTATGACAGTGCCTTCAGTGCTGCCC
ATGAAGAGCAATGGAAGTTAAAGGAGCAACAGCTGAAAGTGCAGATTGCTCAGCTCGAGACTGCCTTGAA
GTCTGACTTAACAGACAAAACTGAAATCCTTGACAGATTAAAAACTGAAAGAGATCAAAATGAAAAACTC
GTTCAAGAGAATAGAGAACTACAGTTACAGTATCTGGAACAAAAGCAACAACTTGATGAACTTAAAAAAC
GCATAAAATTGTACAACCAGGAGAATGATATTAATGCTGATGAATTGAGTGAAGCTCTCCTACTTATAAA
GGCTCAAAAAGAACAAAAAAATGGAGACCTTTCCTTTTTAGTGAAAGTAGATAGTGAAATTAATAAAGAT
CTAGAACGCTCTATGAGAGAGCTGCAAGCAACTCATGCAGAAACGGTGCAAGAGCTGGAAAAGACAAGAA
ACATGCTAATTATGCAACACAAAATTAATAAAGATTATCAGATGGAGGTTGAGGCAGTGACCCGTAAGAT
GGAAAATTTGCAGCAAGATTATGAACTCAAAGTGGAACAGTATGTTCATCTTCTTGATATCAGGGCTGCA
CGTATCCATAAACTAGAAGCCCAATTAAAGGATATTGCCTATGGCACCAAGCAGTACAAATTTAAACCAG
AAATCATGCCAGATGACTCTGTTGATGAATTTGATGAAACCATCCACTTAGAACGAGGCGAAAATCTATT
TGAAATCCATATCAACAAAGTAACCTTTTCTTCTGAAGTTTTACAGGCATCTGGAGATAAAGAGCCTGTC
ACTTTCTGTACCTATGCTTTCTATGATTTTGAACTACAGACAACTCCCGTAGTGCGAGGCCTTCATCCCG
AATATAACTTCACTTCTCAATATCTTGTTCATGTTAATGACTTATTTTTGCAATATATTCAGAAGAATAC
TATCACCCTTGAGGTCCACCAGGCTTATAGCACAGAATATGAAACAATTGCAGCATGTCAATTAAAATTT
CACGAAATTCTTGAAAAAAGCGGCCGAATATTTTGTACAGCAAGTTTGATTGGAACAAAAGGAGACATCC
CAAATTTTGGCACAGTGGAATACTGGTTCCGATTAAGAGTTCCCATGGATCAAGCAATTCGACTTTATCG
AGAAAGGGCAAAGGCTTTGGGGTATATAACATCAAATTTTAAGGGGCCAGAGCATATGCAGTCGTTAAGT
CAGCAAGCACCCAAAACTGCTCAACTCAGTTCTACAGATTCCACAGATGGCAACTTAAATGAACTTCACA
TTACAATAAGATGTTGCAACCACCTGCAGTCCCGAGCAAGCCACCTGCAGCCACACCCATATGTTGTGTA
CAAGTTTTTTGATTTTGCAGACCATGATACAGCTATCATTCCCAGTAGCAATGATCCACAGTTTGATGAT
CATATGTATTTCCCAGTGCCAATGAATATGGACTTGGATCGATACCTTAAGTCAGAGTCTCTGAGTTTTT
ATGTTTTTGATGATAGTGATACCCAGGAGAATATTTACATAGGAAAAGTCAATGTGCCTCTGATTTCGTT
GGCACATGACAGGTGTATCTCAGGAATATTTGAGTTAACAGACCATCAAAAGCATCCTGCTGGCACCATC
CATGTTATATTGAAATGGAAATTTGCTTACCTTCCACCAAGTGGATCAATAACAACTGAAGACTTAGGAA
ATTTCATTCGCAGCGAAGAGCCAGAAGTTGTTCAAAGACTTCCTCCAGCATCCTCTGTTAGCACACTAGT
TTTAGCACCAAGACCTAAACCAAGACAACGTTTAACACCTGTAGATAAGAAGGTATCTTTCGTGGATATC
ATGCCACATCAGAGTGATGTTTCACAAGAAGGCAGTGTAGATGAGGTAAAAGAGAATACTGAGAAAATGC
AGCAAGGAAAAGATGATGTGTCTTTACTATCTGAAGGTCAGCTTGCAGAACAAAGCTTGGCATCTTCTGA
AGATGAAACAGAAATAACAGAGGACTTGGAACCAGAAGTTGAAGAGGACATGTCAGCTTCTGACAGTGAT
GACTGTATTATTCCAGGTCCTATCTCCAAGAATATCAAACAGCCATCAGAAAAAATTCGGATTGAGATCA
TAGCTCTAAGCCTTAATGATTCTCAAGTAACCATGGATGACACTATCCAACGGCTGTTTGTTGAGTGTCG
ATTCTACAGTCTTCCTGCTGAAGAGACACCCGTGTCACTTCCAAAACCCAAGAGTGGGCAGTGGGTCTAC
TATAACTATAGCAATGTGATCTACGTGGATAAAGAAAACAACAAAGCAAAGAGAGACATCTTAAAAGCTA
TACTACAAAAACAAGAGATGCCTAATAGAAGCCTTCGCTTCACCGTGGTCAGTGACCCTCCAGAGGACGA
GCAGGACCTGGAGTGTGAGGACATTGGCGTGGCTCACGTCGACCTTGCCGACATGTTTCAGGAAGGGAGG
GACCTCATTGAGCAAAATATCGATGTTTTTGATGCACGAGCAGATGGTGAAGGTATTGGCAAGCTCAGGG
TAACAGTCGAAGCTCTCCATGCCCTCCAGTCTGTCTACAAGCAATACAGAGATGACTTGGAGGCTTGA

Translation (1235 aa):
MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSRVSREELEDRFLRLHDENILLKQHARK
QEDKIKRMATKLIRLVNDKKRYERVGGGPKRLGRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQL
QTQGYRQTPYNNVQSRINTGRRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRN
LENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLVEKSN
ALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSMKFSERRIEELQDRIND
LEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQLETALKSDLTDKTEILDRLKTERDQNEKL
VQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKD
LERSMRELQATHAETVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAA
RIHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEVLQASGDKEPV
TFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKF
HEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVPMDQAIRLYRERAKALGYITSNFKGPEHMQSLS
QQAPKTAQLSSTDSTDGNLNELHITIRCCNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDD
HMYFPVPMNMDLDRYLKSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTI
HVILKWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRLTPVDKKVSFVDI
MPHQSDVSQEGSVDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSEDETEITEDLEPEVEEDMSASDSD
DCIIPGPISKNIKQPSEKIRIEIIALSLNDSQVTMDDTIQRLFVECRFYSLPAEETPVSLPKPKSGQWVY
YNYSNVIYVDKENNKAKRDILKAILQKQEMPNRSLRFTVVSDPPEDEQDLECEDIGVAHVDLADMFQEGR
DLIEQNIDVFDARADGEGIGKLRVTVEALHALQSVYKQYRDDLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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