NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45472.1 Public Homo sapiens 16 ARMC5 24 110 108 CCDS HistoryNCBI Gene:79798Re-query CCDS DB by CCDS ID:45472.1Re-query CCDS DB by GeneID:79798See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268314.9 ENSP00000268314.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268314.9Link to Ensembl Protein Viewer:ENSP00000268314.4Re-query CCDS DB by Nucleotide ID:ENST00000268314Re-query CCDS DB by Protein ID:ENSP00000268314
Original member Current member EBI ENST00000563544.5 ENSP00000456877.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563544.5Link to Ensembl Protein Viewer:ENSP00000456877.1Re-query CCDS DB by Nucleotide ID:ENST00000563544Re-query CCDS DB by Protein ID:ENSP00000456877
Original member Current member NCBI NM_001105247.2 NP_001098717.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105247.2Link to Protein Sequence:NP_001098717.1Re-query CCDS DB by Nucleotide ID:NM_001105247Re-query CCDS DB by Protein ID:NP_001098717Link to BLAST:NP_001098717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098717.1 935 Q96C12-1 935 100% 0 0

Chromosomal Locations for CCDS 45472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31459525 31459999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31461922 31462029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31462131 31462917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31464394 31464887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31465850 31465982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31466079 31466889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGGCGGCTGCGAAGCCAACCCTCACGGACTCGCTCTCGTTCTGCCTCGCGCAGCTCGCGGCGGCGGCCG
GGGAGGCTCTGGGTGGGGAAAAGGACCCAGCGACCAACGAGACACCCCTGAGCCGCGCGCTCCTAGCCCT
CCGCACGCGCCACATCAAGGCAGCGGGGGGAATCGAGCGCTTCCGGGCACGCGGCGGGCTCCGCCCCCTA
CTCGCGCTGCTACGGCGAGCGGCTGCAGCGGGTTCCGCCCCGTCCCAGGCAGGCCCCGGCTCCGCCCCCT
CGTCGGCCGCGTCGGGAGCTTCTAGCCCCGCCCCCGCGTCGGGCCCCGCCCCCTCCGCTGTGTCGTCGTC
TAGTCCTACGCCGCCAGTGCGCCTGCGCAAGACGCTGGACTTGGCGCTCAGCATCCTAGCCGATTGCTGT
ACGGAAGGGGCGTGCCGGACCGAAGTGCGCAGACTCGGAGGCATACTCCCTTTGGTGACCATTCTTCAGT
GCATGAAGACAGACAGCATCCAGAACCGAACGGCCCGTGCCCTGGGGAACTTAGCCATGGAACCTGAGAG
CTGTGGGGACATCCACTGTGCTGGTGCTGTTCCCCTGCTTGTGGAGAGCCTGACAGCCTGCCAGGACTCG
CAGTGCCTACAGAGCGTGGTGCGTGCCCTCCGTAACCTGGCAGACTCACCCCAGCACCGCCTGGCCTTGG
CACAGCAGGGAGCAGTGCGTCCGCTGGCCGAGCTCCTGGCCACTGCCCCAGATGCTGCACTGACCTTAGC
CCTCGTCCGTGCCCTCCTGGAACTCAGCCGAGGCTGCTCCCGGGCCTGTGCTGAGCAGCTAAGTCTGGGT
GGGGGATTGGGCCCACTCGTCAGCCTGGCTTCCCACCCCAAGCGGGCAGTACGCGAGGGAACCATTCTGA
TCCTCGCCAACCTGTGTGCCCAGGGCCTGATTCGGCCTGCACTGGGCAATGCTGGTGGCGTGGAGGTGCT
GGTAGATGAGCTCCGGCAGCGCCGGGATCCTAATGGAGCTAGCCCAACCTCCCAGCAGCCCCTGGTGCGG
GCTGTGTGCCTCCTATGTCGTGAGGCCATCAACCGGGCCCGACTGCGGGATGCTGGTGGCTTGGATCTAC
TGATGGGCCTGCTGCGGGACCCTCGTGCAAGCGCATGGCACCCTCGTATTGTGGCTGCCCTTGTGGGGTT
TCTGTATGACACTGGGGCCCTGGGCCGGCTGCAGGCTCTGGGACTTGTGCCTCTCCTGGCTGGGCAGCTG
TGTGGTGAGGCTGGTGAGGAGGAAGAAGAGGGAAGAGAAGCTGCTTCCTGGGACTTTCCTGAGGAGAGGA
CCCCTGAGCGGGCACAGGGTGGAAGCTTCCGGAGCCTCAGGTCGTGGCTGATCTCCGAGGGCTATGCCAC
AGGCCCTGATGACATCTCCCCCGACTGGTCTCCTGAGCAGTGTCCGCCGGAGCCCATGGAGCCGGCCAGC
CCCGCCCCGACCCCGACCTCGCTGCGGGCACCACGCACCCAACGCACTCCGGGCCGCAGCCCCGCCGCCG
CCATCGAGGAGCCTTGGGGACGCGAAGGGCCAGCCCTGCTGCTGCTGTCGCGCTTTTCCCAGGCCCCTGA
CCCAAGTGGGGCACTTGTGACCGGCCCGGCGCTGTACGGCCTGCTGACCTATGTGACCGGCGCACCGGGC
CCGCCCAGCCCACGTGCACTGCGCATTCTGTCACGCCTCACCTGCAACCCTGCCTGCCTCGAGGCCTTCG
TGCGCAGCTATGGCGCGGCGCTGCTGCGGGCCTGGCTGGTGCTGGGGGTGGCGCCTGACGATTGGCCGGC
ACCACGTGCCCGGCCCACTCTCCACAGCCGGCACCGAGAGCTGGGGGAGAGGCTACTGCAGAACCTGACG
GTTCAGGCTGAGTCGCCCTTTGGGGTTGGGGCCCTGACGCACCTGCTGCTCTCTGGGAGCCCTGAGGACC
GAGTGGCCTGCGCGCTGACCCTGCCCTTCATCTGCCGGAAGCCCTCTCTGTGGCGCCGGCTGCTTCTGGA
GCAGGGTGGTCTCCGGCTCCTCCTTGCGGCGCTGACCCGGCCGGCCCCACACCCGCTCTTCCTCTTCTTT
GCCGCGGACTCCCTTTCCTGCCTCCAAGACCTGGTGTCTCCCACTGTGAGCCCAGCTGTCCCACAGGCAG
TCCCCATGGACCTAGACTCACCTTCCCCTTGCCTCTATGAACCTCTGCTGGGCCCAGCCCCTGTCCCAGC
TCCCGACCTGCACTTCCTGCTGGACTCAGGCCTCCAGCTCCCTGCCCAGCGAGCGGCCTCAGCCACCGCC
TCCCCTTTCTTCCGGGCCCTGCTGTCAGGCAGCTTTGCAGAAGCCCAGATGGACCTGGTGCCCCTGCGAG
GTCTGTCGCCTGGTGCAGCCTGGCCTGTCCTGCATCATTTGCATGGTTGTCGGGGGTGTGGGGCTGCCCT
GGGGCCCGTGCCCCCACCAGGCCAGCCCCTGCTGGGTTCAGAGGCCGAGGAGGCACTGGAGGCTGCTGGC
CGTTTCCTACTGCCTGGGCTGGAGGAGGAGCTGGAAGAGGCCGTGGGCCGCATCCACCTGGGACCCCAGG
GTGGCCCGGAGTCAGTGGGTGAGGTGTTCCGCCTGGGCCGGCCCCGGCTGGCTGCCCACTGTGCCCGCTG
GACACTGGGGTCAGAGCAGTGCCCGAGGAAGCGGGGTCTGGCCCTGGTGGGGCTTGTGGAGGCAGCAGGT
GAAGAGGCAGGGCCCCTGACGGAGGCTTTGCTGGCTGTGGTGATGGGGATTGAGTTGGGGGCAAGGGTCC
CTGCCTAG

Translation (935 aa):
MAAAKPTLTDSLSFCLAQLAAAAGEALGGEKDPATNETPLSRALLALRTRHIKAAGGIERFRARGGLRPL
LALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSILADCC
TEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARALGNLAMEPESCGDIHCAGAVPLLVESLTACQDS
QCLQSVVRALRNLADSPQHRLALAQQGAVRPLAELLATAPDAALTLALVRALLELSRGCSRACAEQLSLG
GGLGPLVSLASHPKRAVREGTILILANLCAQGLIRPALGNAGGVEVLVDELRQRRDPNGASPTSQQPLVR
AVCLLCREAINRARLRDAGGLDLLMGLLRDPRASAWHPRIVAALVGFLYDTGALGRLQALGLVPLLAGQL
CGEAGEEEEEGREAASWDFPEERTPERAQGGSFRSLRSWLISEGYATGPDDISPDWSPEQCPPEPMEPAS
PAPTPTSLRAPRTQRTPGRSPAAAIEEPWGREGPALLLLSRFSQAPDPSGALVTGPALYGLLTYVTGAPG
PPSPRALRILSRLTCNPACLEAFVRSYGAALLRAWLVLGVAPDDWPAPRARPTLHSRHRELGERLLQNLT
VQAESPFGVGALTHLLLSGSPEDRVACALTLPFICRKPSLWRRLLLEQGGLRLLLAALTRPAPHPLFLFF
AADSLSCLQDLVSPTVSPAVPQAVPMDLDSPSPCLYEPLLGPAPVPAPDLHFLLDSGLQLPAQRAASATA
SPFFRALLSGSFAEAQMDLVPLRGLSPGAAWPVLHHLHGCRGCGAALGPVPPPGQPLLGSEAEEALEAAG
RFLLPGLEEELEEAVGRIHLGPQGGPESVGEVFRLGRPRLAAHCARWTLGSEQCPRKRGLALVGLVEAAG
EEAGPLTEALLAVVMGIELGARVPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH