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Report for CCDS45450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45450.1 Public Homo sapiens 16 GSG1L 24 110 108 CCDS HistoryNCBI Gene:146395Re-query CCDS DB by CCDS ID:45450.1Re-query CCDS DB by GeneID:146395See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45450.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447459.7 ENSP00000394954.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447459.7Link to Ensembl Protein Viewer:ENSP00000394954.2Re-query CCDS DB by Nucleotide ID:ENST00000447459Re-query CCDS DB by Protein ID:ENSP00000394954
Original member Current member NCBI NM_001109763.2 NP_001103233.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001109763.2Link to Protein Sequence:NP_001103233.1Re-query CCDS DB by Nucleotide ID:NM_001109763Re-query CCDS DB by Protein ID:NP_001103233Link to BLAST:NP_001103233.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103233.1 331 Q6UXU4-1 331 100% 0 0

Chromosomal Locations for CCDS 45450.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 27791370 27791467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27807487 27807554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27828789 27828956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27844950 27845061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27884486 27884638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27963156 27963203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28063076 28063424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAAGACTAGCCGCCGCGGCCGAGCGCTCCTGGCCGTGGCCCTGAACCTGCTGGCGCTGCTGTTCGCCA
CCACCGCTTTCCTCACCACGCACTGGTGCCAGGGCACGCAGCGGGTCCCCAAGCCGGGCTGCGGCCAGGG
CGGGCGCGCCAACTGCCCCAACTCGGGCGCCAACGCCACGGCCAACGGCACCGCCGCCCCCGCCGCCGCC
GCCGCCGCCGCCACCGCCTCGGGGAACGGCCCCCCTGGCGGCGCGCTCTACAGCTGGGAGACCGGCGACG
ACCGCTTCCTCTTCAGGAATTTCCACACCGGCATCTGGTACTCGTGCGAGGAGGAGCTCAGCGGGCTTGG
TGAAAAATGTCGCAGCTTCATTGACCTGGCCCCGGCATCGGAGAAAGGGGTCCTGTGGCTGTCTGTGGTC
TCCGAGGTGCTGTACATTCTGCTGCTGGTGGTTGGCTTCAGCCTCATGTGTCTCGAGCTCTTCCACTCCA
GCAATGTCATCGACGGGCTCAAGCTCAATGCCTTCGCGGCTGTCTTCACGGTGCTCTCAGGCCTCCTGGG
AATGGTCGCCCACATGATGTACACGCAGGTGTTCCAGGTCACCGTGAGCCTCGGTCCTGAGGACTGGAGA
CCCCATTCCTGGGACTACGGGTGGTCCTTCTGCCTGGCGTGGGGCTCCTTTACCTGCTGCATGGCAGCCT
CTGTCACCACGCTCAACTCCTACACCAAGACGGTCATTGAGTTCCGGCACAAGCGCAAGGTCTTTGAGCA
GGGCTACCGGGAAGAGCCGACCTTCATAGACCCTGAGGCCATCAAGTACTTCCGGGAGAGGATGGAGAAG
AGGGACGGGAGCGAGGAGGACTTTCACTTAGACTGCCGCCACGAGAGATACCCTGCCCGACACCAGCCAC
ACATGGCGGATTCCTGGCCCCGGAGCTCCGCACAGGAAGCACCAGAGCTGAACCGACAGTGCTGGGTCTT
GGGGCACTGGGTGTGA

Translation (331 aa):
MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAPAAA
AAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVV
SEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWR
PHSWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFRERMEK
RDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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