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Report for CCDS45254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45254.1 Public Homo sapiens 15 CTXN2 24 110 108 CCDS HistoryNCBI Gene:399697Re-query CCDS DB by CCDS ID:45254.1Re-query CCDS DB by GeneID:399697See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417307.3 ENSP00000406145.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417307.3Link to Ensembl Protein Viewer:ENSP00000406145.2Re-query CCDS DB by Nucleotide ID:ENST00000417307Re-query CCDS DB by Protein ID:ENSP00000406145
Original member Current member EBI ENST00000647363.1 ENSP00000493942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647363.1Link to Ensembl Protein Viewer:ENSP00000493942.1Re-query CCDS DB by Nucleotide ID:ENST00000647363Re-query CCDS DB by Protein ID:ENSP00000493942
Original member Current member EBI ENST00000645050.1 ENSP00000495979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645050.1Link to Ensembl Protein Viewer:ENSP00000495979.1Re-query CCDS DB by Nucleotide ID:ENST00000645050Re-query CCDS DB by Protein ID:ENSP00000495979
Original member Current member EBI ENST00000644354.1 ENSP00000495988.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644354.1Link to Ensembl Protein Viewer:ENSP00000495988.1Re-query CCDS DB by Nucleotide ID:ENST00000644354Re-query CCDS DB by Protein ID:ENSP00000495988
Original member Current member NCBI NM_001145668.2 NP_001139140.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145668.2Link to Protein Sequence:NP_001139140.1Re-query CCDS DB by Nucleotide ID:NM_001145668Re-query CCDS DB by Protein ID:NP_001139140Link to BLAST:NP_001139140.1
Original member Current member NCBI NM_001370415.1 NP_001357344.1 Accepted alive Link to Nucleotide Sequence:NM_001370415.1Link to Protein Sequence:NP_001357344.1Re-query CCDS DB by Nucleotide ID:NM_001370415Re-query CCDS DB by Protein ID:NP_001357344Link to BLAST:NP_001357344.1
Original member Current member NCBI NM_001370416.1 NP_001357345.1 Accepted alive Link to Nucleotide Sequence:NM_001370416.1Link to Protein Sequence:NP_001357345.1Re-query CCDS DB by Nucleotide ID:NM_001370416Re-query CCDS DB by Protein ID:NP_001357345Link to BLAST:NP_001357345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139140.1 81 P0C2S0 81 100% 0 0
NP_001357344.1 81 P0C2S0 81 100% 0 0
NP_001357345.1 81 P0C2S0 81 100% 0 0

Chromosomal Locations for CCDS 45254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 48201301 48201546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGAGTAGTACCTACTGTGGCAACTCTTCAGCTAAGATGAGTGTCAACGAAGTATCAGCTTTCTCATTGA
CTCTGGAGCAAAAAACTGGCTTTGCTTTTGTTGGGATTTTGTGTATCTTCTTGGGACTTCTTATTATCCG
ATGCTTCAAAATCCTGCTAGACCCATATAGTAGCATGCCTTCCTCTACATGGGAAGATGAAGTTGAAGAG
TTTGATAAAGGGACATTTGAATATGCACTCGCGTGA

Translation (81 aa):
MSSTYCGNSSAKMSVNEVSAFSLTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEE
FDKGTFEYALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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