NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44851.1 Public Homo sapiens 12 C12orf71 24 110 108 CCDS HistoryNCBI Gene:728858Re-query CCDS DB by CCDS ID:44851.1Re-query CCDS DB by GeneID:728858See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429849.3 ENSP00000413728.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429849.3Link to Ensembl Protein Viewer:ENSP00000413728.2Re-query CCDS DB by Nucleotide ID:ENST00000429849Re-query CCDS DB by Protein ID:ENSP00000413728
Original member Current member NCBI NM_001080406.2 NP_001073875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080406.2Link to Protein Sequence:NP_001073875.1Re-query CCDS DB by Nucleotide ID:NM_001080406Re-query CCDS DB by Protein ID:NP_001073875Link to BLAST:NP_001073875.1
Original member Current member NCBI NM_001384983.1 NP_001371912.1 Accepted alive Link to Nucleotide Sequence:NM_001384983.1Link to Protein Sequence:NP_001371912.1Re-query CCDS DB by Nucleotide ID:NM_001384983Re-query CCDS DB by Protein ID:NP_001371912Link to BLAST:NP_001371912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073875.1 269 A8MTZ7 269 100% 0 0
NP_001371912.1 269 A8MTZ7 269 100% 0 0

Chromosomal Locations for CCDS 44851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27081174 27081467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27081968 27082483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCATATTCATCCTCTAACAGCGACATAGAGGACGACAGCTCCAAATCCAATTCCAACCTGAGCCTCT
CTGTGGGCTATTTCCCCTGTGAGGACACCCCCTGTGAGGACACAACCTCCTGGGAAGATGCACCTTCCAA
GGGTCCTTCCATCCACTTTCTGCCTCCCGTCCAAGGGGCATGGGGGACTGAAAGGATAGGGAGACGCATG
AAGAGACAAGACCAAATTCAGGATGAACCAGAGCAGTTTTGCAAACTAAGCATCTTCCTGGCCTGGGACG
TGGACATTGGCTCCGATAACACAGACTCAAGAGCTAATAGGCTTCTAAATGGAGACAACCTGTGGATAGA
CAAGTTACCAAAAGAGAGAACAAAACTGTCTGTTGGCAAACTGAATAATCTTGTGCAAGAGTTTCAGATA
TTTCTAGAAAATCTGAAAGATGATGACGCTGTATTTCCTGAAACTGCTCAGCAAGATTTCCAGCTATCCA
GCGGCTCCCCTCCGGAAATGGTTCAGATGATAAGCCAGGCAACCGCCAGCCAAAGGACAAGCGCTCCAGA
GATCTCCTCAATCCTGTCAGAGCAGCCAGAGAAGGATGACACTCCTTCACACACACAGGCCCAGTGCTGC
CTGAACTTTGGGTGGGCCTTCAGCTGGCTGAGGCAGCGTATCCTCCCCTCTCTGCTGAGGAGGGATCACC
CTGTGAATGCCACCAAAAGTCCCCATCGGTCAGCACCAACGAAAAGACTCTTTCACAGAGGCAAGAGAAT
TCAACCTCAAGAAACCCTTGAATTAGGACATCCCATATAG

Translation (269 aa):
MAYSSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGAWGTERIGRRM
KRQDQIQDEPEQFCKLSIFLAWDVDIGSDNTDSRANRLLNGDNLWIDKLPKERTKLSVGKLNNLVQEFQI
FLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSHTQAQCC
LNFGWAFSWLRQRILPSLLRRDHPVNATKSPHRSAPTKRLFHRGKRIQPQETLELGHPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH