NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
445.1 Public Homo sapiens 1 OXCT2 24 110 108 CCDS HistoryNCBI Gene:64064Re-query CCDS DB by CCDS ID:445.1Re-query CCDS DB by GeneID:64064See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327582.5 ENSP00000361914.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327582.5Link to Ensembl Protein Viewer:ENSP00000361914.1Re-query CCDS DB by Nucleotide ID:ENST00000327582Re-query CCDS DB by Protein ID:ENSP00000361914
Original member Current member NCBI NM_022120.2 NP_071403.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022120.2Link to Protein Sequence:NP_071403.1Re-query CCDS DB by Nucleotide ID:NM_022120Re-query CCDS DB by Protein ID:NP_071403Link to BLAST:NP_071403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071403.1 517 Q9BYC2 517 100% 0 0

Chromosomal Locations for CCDS 445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39769702 39771255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCGGCGCTGCGGCTCCTGGCGTCAGTGCTCGGGCGCGGGGTCCCCGCCGGCGGCTCAGGGCTCGCGC
TGTCCCAGGGCTGCGCCCGCTGCTTTGCCACCAGTCCCCGGCTCCGTGCCAAGTTCTACGCGGACCCGGT
GGAGATGGTGAAGGACATCTCTGACGGGGCGACCGTCATGATCGGGGGCTTCGGGCTCTGCGGGATCCCC
GAGAACCTGATCGCCGCGCTGCTCAGGACCCGCGTGAAAGACCTGCAGGTGGTCAGCAGCAACGTGGGCG
TGGAGGACTTCGGCCTGGGCCTCCTGCTGGCCGCCAGGCAGGTCCGTCGCATCGTCTGTTCCTACGTGGG
CGAGAACACCCTGTGCGAGAGCCAGTACCTGGCAGGAGAGCTGGAGCTGGAGCTCACGCCCCAGGGCACC
CTGGCCGAGCGCATCCGCGCGGGGGGCGCCGGGGTGCCCGCCTTCTACACCCCCACGGGCTACGGGACCC
TGGTCCAGGAAGGGGGCGCCCCCATCCGCTACACCCCGGACGGCCACCTGGCGCTCATGAGCCAGCCCCG
AGAGGTGAGGGAGTTCAACGGCGACCACTTCCTTTTGGAGCGCGCCATCCGGGCAGACTTCGCCCTGGTG
AAAGGGTGGAAGGCCGACCGGGCAGGAAACGTGGTCTTCAGGAGAAGCGCCCGCAATTTCAACGTGCCCA
TGTGCAAAGCTGCAGACGTCACGGCGGTGGAGGTGGAAGAGATCGTGGAGGTGGGGGCTTTCCCCCCAGA
AGACATCCACGTTCCTAACATTTATGTAGATCGCGTGATAAAGGGGCAGAAATACGAGAAACGAATTGAG
CGCTTAACGATCCTGAAAGAGGAAGATGGAGACGCTGGAAAGGAAGAGGACGCCAGGACGCGCATCATCA
GACGCGCAGCTCTGGAATTTGAGGACGGCATGTACGCCAATCTGGGCATAGGCATCCCCCTGCTGGCCAG
CAACTTCATCAGTCCCAGCATGACTGTCCATCTTCACAGTGAGAACGGGATCCTGGGCCTGGGCCCGTTT
CCCACGGAAGATGAGGTGGATGCCGACCTCATCAATGCAGGCAAGCAGACGGTCACGGTGCTTCCCGGGG
GCTGCTTCTTCGCCAGCGACGACTCCTTCGCCATGATCCGAGGGGGACACATCCAACTAACCATGCTTGG
AGCCATGCAGGTTTCCAAATACGGCGACCTGGCGAACTGGATGATCCCTGGCAAGAAGGTGAAAGGCATG
GGCGGTGCCATGGACTTGGTGTCCAGTCAGAAGACCAGAGTGGTGGTCACCATGCAGCACTGCACAAAGG
ACAACACCCCCAAGATCATGGAGAAATGCACCATGCCGCTGACCGGGAAGCGGTGCGTGGACCGCATCAT
CACCGAGAAGGCCGTGTTTGACGTGCACAGGAAGAAAGAGCTGACGCTGAGGGAGCTCTGGGAGGGCCTG
ACGGTGGACGACATCAAAAAGAGCACGGGGTGTGCCTTTGCTGTGTCCCCGAACCTCAGGCCCATGCAGC
AGGTGGCACCCTGA

Translation (517 aa):
MAALRLLASVLGRGVPAGGSGLALSQGCARCFATSPRLRAKFYADPVEMVKDISDGATVMIGGFGLCGIP
ENLIAALLRTRVKDLQVVSSNVGVEDFGLGLLLAARQVRRIVCSYVGENTLCESQYLAGELELELTPQGT
LAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIRYTPDGHLALMSQPREVREFNGDHFLLERAIRADFALV
KGWKADRAGNVVFRRSARNFNVPMCKAADVTAVEVEEIVEVGAFPPEDIHVPNIYVDRVIKGQKYEKRIE
RLTILKEEDGDAGKEEDARTRIIRRAALEFEDGMYANLGIGIPLLASNFISPSMTVHLHSENGILGLGPF
PTEDEVDADLINAGKQTVTVLPGGCFFASDDSFAMIRGGHIQLTMLGAMQVSKYGDLANWMIPGKKVKGM
GGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKAVFDVHRKKELTLRELWEGL
TVDDIKKSTGCAFAVSPNLRPMQQVAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH