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Report for CCDS44397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44397.1 Public Homo sapiens 10 AGAP6 24 110 108 CCDS HistoryNCBI Gene:414189Re-query CCDS DB by CCDS ID:44397.1Re-query CCDS DB by GeneID:414189See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412531.7 ENSP00000500374.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412531.7Link to Ensembl Protein Viewer:ENSP00000500374.1Re-query CCDS DB by Nucleotide ID:ENST00000412531Re-query CCDS DB by Protein ID:ENSP00000500374
Original member Current member NCBI NM_001077665.3 NP_001071133.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077665.3Link to Protein Sequence:NP_001071133.2Re-query CCDS DB by Nucleotide ID:NM_001077665Re-query CCDS DB by Protein ID:NP_001071133Link to BLAST:NP_001071133.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071133.2 686 Q5VW22-2 686 100% 0 0

Chromosomal Locations for CCDS 44397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49988716 49988938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49989308 49989376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49991676 49991744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49994395 49994429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50001996 50002096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50004685 50004720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50008025 50008076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 50008711 50010186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGGGAACATACTGACCTGTCGTGTGCACCCTAGCGTCAGCCTCGAGTTTGACCAGCAGCAGGGGTCGG
TGTGTCCCTCTGAATCTGAGACCTATGAGGCAGGAGCTAGGGACAGGATGGCAGGAGCGCCCATGGCTGC
TGCTGTACAGCCTGCTGAGGTGACTGTTGAAGTTGGTGAGGACCTCCACATGCACCACGTTCGTGACCGG
GAGATGCCTGAAGCTTTGGAGTTTAACCTTTCTGCCAATCCAGAGTCAAGCACAATATTCCAGAGGAACT
CTCAAACAGAAGCTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTC
TCAAACAGATGTTGTAGAAATAAGAAGAAGCAACTGTACAAACCATGTATCTGCTGTGCGTTTCAGTCAA
CAATACAGCTTGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAA
TAATATCTGTGACCTTGGAGATACCTCATCATATCACACAAAGAGATGCAGATAGAACTTTGAGCATACC
TGATGAACAGTTACACTCATTTGCGGTTTCCACCGTGCACATTATGAAGAAAAGAAATGGAGGTGGGAGT
TTAAATAACTATTCCTCCTCCATTCCATCGACTCCCAGCACCAGCCAGGAGGACCCTCAGTTCAGTGTTC
CTCCCACTGCCAACACACCCACGCCCGTTTGCAAGCGGTCCATGCGCTGGTCCAACCTGTTTACATCTGA
GAAAGGGAGTGACCCAGACAAAGAGAGGAAAGCCCCGGAGAATCATGCTGACACCATCGGGAGCGGTAGA
GCCATCCCCATTAAACAGGGCATGCTCTTAAAGCGAAGTGGGAAATGGCTGAAGACATGGAAAAAGAAAT
ACGTCACCCTGTGTTCCAATGGCATGCTCACCTATTATTCAAGCTTAGGTGATTATATGAAGAATATTCA
TAAAAAAGAGATTGACCTTCAGACATCTACCATCAAAGTCCCAGGAAAGTGGCCATCCCTAGCCACATCG
GCCTGCACACCCATCTCCAGCTCTAAAAGCAATGGCCTATCCAAGGACATGGACACCGGGCTGGGTGACT
CCATATGCTTCAGCCCCAGTATCTCCAGCACCACCAGCCCCAAGCTCAACCCGCCCCCCTCTCCTCATGC
TAATAAAAAGAAACACCTAAAGAAGAAAAGCACCAACAACTTTATGATTGTGTCTGCCACTGGCCAAACG
TGGCACTTTGAAGCCACGACGTATGAGGAGCGGGATGCCTGGGTCCAAGCCATCCAGAGCCAGATCCTGG
CCAGCCTGCAGTCATGCGAGAGCAGTAAAAGCAAGTCCCAGCTGACCAGCCAGAGCGAGGCCATGGCCCT
GCAGTCGATCCAAAACATGCGTGGGAACGCCCACTGTGTGGACTGTGAGACCCAGAATCCTAAGTGGGCC
AGTTTGAACTTGGGAGTCCTCATGTGTATTGAATGCTCAGGTATCCACCGCAGTCTTGGCCCCCACCTTT
CCCGTGTGCGATCTCTGGAGCTGGATGACTGGCCAGTTGAGCTCAGGAAGGTTATGTCATCTATTGTCAA
TGACCTAGCCAACAGCATCTGGGAAGGGAGCAGCCAGGGGCAGACAAAACCCTCAGAAAAGTCCACGAGG
GAAGAGAAGGAACGGTGGATCCGTTCCAAATATGAGGAGAAGCTCTTTCTGGCCCCACTACCCTGCACTG
AGCTGTCCCTGGGCCAGCAGCTGCTGCGGGCCACCGCTGATGAGGACCTGCAGACAGCCATCCTGCTGCT
GGCACATGGCTCCTGTGAGGAGGTGAACGAGACCTGTGGGGAGGGAGACGGCTGCACGGCGCTCCATCTG
GCCTGCCGCAAGGGGAATGTGGTCCTGGCGCAGCTCCTGATCTGGTACGGGGTGGACGTCATGGCCCGAG
ATGCCCACGGGAACACAGCGCTGACCTACGCCCGGCAGGCCTCCAGCCAGGAGTGCATCAACGTGCTTCT
GCAGTACGGCTGCCCCGACGAGTGTGTGTAG

Translation (686 aa):
MGNILTCRVHPSVSLEFDQQQGSVCPSESETYEAGARDRMAGAPMAAAVQPAEVTVEVGEDLHMHHVRDR
EMPEALEFNLSANPESSTIFQRNSQTEALEFNPSANPEASTIFQRNSQTDVVEIRRSNCTNHVSAVRFSQ
QYSLCSTIFLDDSTAIQHYLTMTIISVTLEIPHHITQRDADRTLSIPDEQLHSFAVSTVHIMKKRNGGGS
LNNYSSSIPSTPSTSQEDPQFSVPPTANTPTPVCKRSMRWSNLFTSEKGSDPDKERKAPENHADTIGSGR
AIPIKQGMLLKRSGKWLKTWKKKYVTLCSNGMLTYYSSLGDYMKNIHKKEIDLQTSTIKVPGKWPSLATS
ACTPISSSKSNGLSKDMDTGLGDSICFSPSISSTTSPKLNPPPSPHANKKKHLKKKSTNNFMIVSATGQT
WHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSQLTSQSEAMALQSIQNMRGNAHCVDCETQNPKWA
SLNLGVLMCIECSGIHRSLGPHLSRVRSLELDDWPVELRKVMSSIVNDLANSIWEGSSQGQTKPSEKSTR
EEKERWIRSKYEEKLFLAPLPCTELSLGQQLLRATADEDLQTAILLLAHGSCEEVNETCGEGDGCTALHL
ACRKGNVVLAQLLIWYGVDVMARDAHGNTALTYARQASSQECINVLLQYGCPDECV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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