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Report for CCDS44312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44312.1 Public Homo sapiens 1 RCOR3 24 110 108 CCDS HistoryNCBI Gene:55758Re-query CCDS DB by CCDS ID:44312.1Re-query CCDS DB by GeneID:55758See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419091.7 ENSP00000413929.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419091.7Link to Ensembl Protein Viewer:ENSP00000413929.2Re-query CCDS DB by Nucleotide ID:ENST00000419091Re-query CCDS DB by Protein ID:ENSP00000413929
Original member Current member NCBI NM_001136223.3 NP_001129695.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136223.3Link to Protein Sequence:NP_001129695.1Re-query CCDS DB by Nucleotide ID:NM_001136223Re-query CCDS DB by Protein ID:NP_001129695Link to BLAST:NP_001129695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129695.1 553 Q9P2K3-3 553 100% 0 0

Chromosomal Locations for CCDS 44312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 211259561 211259726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211260108 211260164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211271232 211271309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211274210 211274262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211276257 211276418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211278117 211278241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211279238 211279316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211289178 211289396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211295676 211295753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211304083 211304140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211312720 211312961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211313424 211313768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCCCGGCATGATGGAGAAAGGGCCCGAGTTACTGGGGAAGAACCGATCGGCCAACGGCAGCGCCAAGA
GCCCGGCAGGCGGCGGCGGCAGCGGCGCCTCGTCCACCAACGGCGGGCTGCACTACTCAGAGCCCGAGAG
CGGCTGCAGCAGCGACGACGAGCACGATGTTGGGATGAGAGTCGGAGCCGAATACCAAGCTCGGATCCCT
GAATTTGATCCAGGTGCTACAAAGTACACAGATAAAGACAATGGAGGGATGCTTGTATGGTCTCCATATC
ACAGTATCCCAGATGCCAAATTGGATGAATACATTGCAATTGCAAAGGAAAAGCATGGCTACAATGTGGA
ACAGGCACTTGGCATGTTGTTCTGGCATAAACATAACATTGAGAAGTCCCTTGCTGATCTCCCTAATTTC
ACTCCCTTTCCGGATGAGTGGACAGTGGAAGATAAAGTCCTATTTGAACAAGCCTTTAGTTTTCATGGAA
AGAGCTTTCACAGGATTCAGCAAATGCTTCCAGATAAGACAATTGCAAGCCTTGTAAAATATTACTATTC
TTGGAAAAAAACTCGCTCTAGGACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCTAATAGACATAAT
CAGGGTGACAGTGATGATGATGTAGAAGAAACACATCCAATGGATGGGAATGATAGTGATTATGATCCCA
AAAAAGAAGCCAAAAAAGAGGGTAATACTGAACAACCTGTCCAAACTAGCAAGATTGGACTTGGAAGAAG
AGAGTATCAGAGTTTACAACATCGCCATCATTCTCAGCGTTCTAAGTGCCGTCCACCTAAGGGCATGTAT
TTAACCCAGGAAGATGTGGTAGCAGTTTCCTGTAGTCCCAATGCAGCCAACACCATCCTGAGGCAACTGG
ACATGGAGTTGATCTCTCTAAAACGTCAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTTAAACAGAA
AATGGAAGGTGGAATTGAAGAATTCAAACCTCCTGAGTCAAATCAGAAAATTAATGCCCGTTGGACCACA
GAGGAGCAGCTTCTAGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGTAA
TTGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTTGTAAACTACAGGCGTCGGTTTAACTTAGAGGA
GGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTCTAATGGTGATGCTTCTACTTTAGGGGAG
GAGACAAAAAGTGCTTCTAATGTGCCATCAGGGAAGAGCACTGATGAAGAAGAGGAGGCACAGACCCCAC
AGGCTCCTCGGACACTGGGTCCATCACCTCCTGCCCCATCATCCACTCCAACACCAACAGCCCCTATTGC
CACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCTGCCCCGGCTCTTCACCGGCAGCCT
CCTCCACTCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAACTTTAAATCAGCCTCCACCACCTCTTA
TTCGCCCTGCTAATTCCATGCCACCCCGTCTAAACCCAAGACCGGTGTTGTCCACGGTTGGTGGTCAACA
GCCACCATCACTTATTGGAATTCAGACAGATTCACAGTCCTCACTGCACTAA

Translation (553 aa):
MPGMMEKGPELLGKNRSANGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIP
EFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNF
TPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHN
QGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMY
LTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTT
EEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGE
ETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQP
PPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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