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Report for CCDS43985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43985.1 Public Homo sapiens X RHOXF2B 24 110 108 CCDS HistoryNCBI Gene:727940Re-query CCDS DB by CCDS ID:43985.1Re-query CCDS DB by GeneID:727940See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371402.5 ENSP00000360455.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371402.5Link to Ensembl Protein Viewer:ENSP00000360455.3Re-query CCDS DB by Nucleotide ID:ENST00000371402Re-query CCDS DB by Protein ID:ENSP00000360455
Original member Current member NCBI NM_001099685.3 NP_001093155.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099685.3Link to Protein Sequence:NP_001093155.1Re-query CCDS DB by Nucleotide ID:NM_001099685Re-query CCDS DB by Protein ID:NP_001093155Link to BLAST:NP_001093155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093155.1 288 P0C7M4 288 100% 0 0

Chromosomal Locations for CCDS 43985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120072516 120072845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120075900 120075945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120076877 120077288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120077474 120077552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGAGCCTCCGGACCAGTGTAGCCAGTATATGACCAGCTTGCTCAGCCCTGCAGTCGACGACGAGAAAG
AACTACAGGATATGAATGCTATGGTGCTGTCGCTTACTGAAGAGGTCAAAGAGGAGGAAGAGGATGCACA
GCCTGAGCCTGAGCAAGGCACAGCAGCAGGAGAAAAGTTAAAGTCGGCAGGAGCCCAAGGCGGAGAAGAA
AAAGATGGCGGCGGAGAAGAAAAAGATGGCGGCGGCGCCGGAGTTCCTGGCCACCTATGGGAAGGAAACC
TCGAGGGCACCAGCGGCAGCGATGGCAACGTTGAGGACAGCGACCAGAGCGAGAAGGAACCTGGGCAGCA
GTATTCGCGCCCACAGGGCGCCGTCGGGGGGCTGGAGCCTGGCAACGCGCAGCAGCCCAACGTCCACGCC
TTCACCCCATTGCAGCTGCAGGAGCTGGAGTGCATTTTCCAACGCGAGCAGTTCCCCAGTGAGTTCCTGC
GAAGGAGGCTGGCAAGAAGCATGAATGTGACTGAACTCGCAGTGCAGATTTGGTTTGAGAATAGAAGAGC
CAAATGGAGGAGACATCAGAGGGCATTAATGGCAAGAAACATGCTGCCCTTCATGGCAGTGGGCCAGCCT
GTCATGGTAACCGCAGCTGAGGCCATAACGGCACCCTTGTTCATCAGCGGGATGAGAGATGATTACTTCT
GGGACCACAGCCATTCCAGCAGCCTGTGTTTCCCCATGCCACCCTTTCCTCCTCCGTCCTTGCCCCTTCC
ACTCATGCTTCTTCCACCTATGCCACCCGCTGGCCAGGCTGAATTTGGCCCATTCCCTTTTGTTATCGTG
CCTTCTTTCACATTCCCCAATGTCTAA

Translation (288 aa):
MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEE
KDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA
FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQP
VMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIV
PSFTFPNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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