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Report for CCDS4391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4391.1 Public Homo sapiens 5 NSG2 24 110 108 CCDS HistoryNCBI Gene:51617Re-query CCDS DB by CCDS ID:4391.1Re-query CCDS DB by GeneID:51617See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303177.8 ENSP00000307722.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303177.8Link to Ensembl Protein Viewer:ENSP00000307722.3Re-query CCDS DB by Nucleotide ID:ENST00000303177Re-query CCDS DB by Protein ID:ENSP00000307722
Original member Current member EBI ENST00000519717.1 ENSP00000431119.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519717.1Link to Ensembl Protein Viewer:ENSP00000431119.1Re-query CCDS DB by Nucleotide ID:ENST00000519717Re-query CCDS DB by Protein ID:ENSP00000431119
Original member Current member NCBI NM_015980.5 NP_057064.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015980.5Link to Protein Sequence:NP_057064.1Re-query CCDS DB by Nucleotide ID:NM_015980Re-query CCDS DB by Protein ID:NP_057064Link to BLAST:NP_057064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057064.1 171 Q9Y328 171 100% 0 0

Chromosomal Locations for CCDS 4391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 174046756 174046884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 174064232 174064315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 174104228 174104338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 174107314 174107505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGTGAAGCTGAACAGTAACCCCAGCGAGAAGGGAACCAAGCCGCCTTCAGTTGAGGATGGCTTCCAGA
CCGTCCCTCTCATCACTCCCTTGGAGGTTAATCACTTACAGCTGCCTGCTCCAGAAAAGGTGATTGTGAA
GACAAGAACGGAATATCAGCCGGAACAGAAGAACAAAGGGAAGTTCCGGGTGCCGAAAATCGCTGAATTT
ACGGTCACCATCCTTGTCAGCCTGGCCCTAGCTTTCCTTGCGTGCATCGTGTTCCTGGTGGTTTACAAAG
CCTTCACCTATGATCACAGCTGCCCAGAGGGATTCGTCTATAAGCACAAACGCTGTATCCCAGCCTCCCT
GGATGCTTACTACTCCTCCCAGGACCCCAATTCCAGAAGCCGCTTCTACACAGTCATCAGCCACTACAGC
GTGGCCAAGCAGAGCACTGCCCGGGCCATCGGGCCGTGGCTGTCAGCAGCCGCTGTCATCCATGAGCCCA
AGCCGCCCAAGACCCAGGGCCACTAG

Translation (171 aa):
MVKLNSNPSEKGTKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKGKFRVPKIAEF
TVTILVSLALAFLACIVFLVVYKAFTYDHSCPEGFVYKHKRCIPASLDAYYSSQDPNSRSRFYTVISHYS
VAKQSTARAIGPWLSAAAVIHEPKPPKTQGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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