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Report for CCDS43613.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43613.2 Public Homo sapiens 7 CFAP69 24 110 108 CCDS HistoryNCBI Gene:79846Re-query CCDS DB by CCDS ID:43613.2Re-query CCDS DB by GeneID:79846See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 43613.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43613.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389297.8 ENSP00000373948.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389297.8Link to Ensembl Protein Viewer:ENSP00000373948.4Re-query CCDS DB by Nucleotide ID:ENST00000389297Re-query CCDS DB by Protein ID:ENSP00000373948
Original member Current member NCBI NM_001039706.3 NP_001034795.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039706.3Link to Protein Sequence:NP_001034795.2Re-query CCDS DB by Nucleotide ID:NM_001039706Re-query CCDS DB by Protein ID:NP_001034795Link to BLAST:NP_001034795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034795.2 941 A5D8W1-1 941 100% 0 0

Chromosomal Locations for CCDS 43613.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 90245425 90245544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90255423 90255482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90258098 90258163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90261947 90262056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90265301 90265377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90268286 90268384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90271526 90271675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90271781 90271958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90273987 90274110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90277073 90277121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90277213 90277334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90279677 90279893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90282892 90283056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90286281 90286399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90288234 90288352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90297749 90297830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90299867 90300059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90303969 90304106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90304744 90304820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90306901 90307098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90307768 90307854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90309263 90309367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90310068 90310238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGTGGACAGAGGAAGCCGGGGCGACCGCCGAGGCCCAGGAATCCGGCATCAGGAACAAGTCTAGCAGTT
CCAGTCAAATCCCGGTGGTTGGGGTGGTGACGGAGGACGATGAGGCGCAGGATGTTTTCAAGCCTATGGA
CCTTAATCGTGTCATCAAACTCCTCGAAGAGACTGATAAAGATGGCTTGGAAGAAAAACAACTTAAATTT
GTCAAGAAACTGGTACAGTGTTATCAGAATGGACTTCCATTAAGGGATTTAGCACAGATATTTAAAATTC
TGAATCTGTGTTCAGGAAAAATAAAAAACCAGCCTCGTTTTATAGAATCTGCATATGATATCATAAAACT
GTGTGGCTTGCCATTTTTGAAAAAGAAAGTGTCGGATGAAATAACTTATGCTGAAGATACTGCTAATTCA
ATTGCACTTCTGGGTGACTTAATGAAAATACCAAGTTCTGAATTGAGGATACAAATTTGTAAGTGTATTG
TTGATTTTTATCATGCAGAACCACCAAAGAAGCATATTCCAGGTTACCAGCAAGCGAGTTCATCATACAA
GATTCAAATGGCTGAAGTTGGAGGATTAGCAAAAACAATGGTCCAGTCAATGACCTTGCTTGAAAATCAA
CTTGTTGAGAAACTTTGGGTACTTAAAGTTCTGCAGCATCTCTCAACTTCTGAAGTTAATTGTACTATAA
TGATGAAAGCACAAGCAGCCAGTGGAATCTGTACTCACCTCAATGACCCAGATCCCTCTGGACAGCTTTT
ATTTCGTTCATCAGAAATACTTTGGAACTTGCTGGAAAAATCTTCAAAAGAAGAAGTCATACAACAGCTT
AGTAACTTGGAATGTTTGCTGGCTTTGAAGGAAGTATTTAAAAATCTGTTTATGAGAGGTTTCAGTCATT
ATGACCGTCAGCTTAGAAATGACATATTAGTGATCACTACAATTATAGCTCAAAATCCTGAAGCACCAAT
GATTGAATGTGGCTTTACCAAGGATTTGATACTGTTTGCCACCTTTAATGAAGTTAAAAGTCAAAATCTT
TTGGTAAAAGGACTTAAGCTTTCTAATTCCTATGAAGATTTTGAGTTGAAGAAATTACTATTCAACGTAA
TTGTGATCTTATGTAAAGATTTACCTACTGTACAGCTATTAATTGATGGCAAAGTTATTTTGGCTTTGTT
TACCTATGTTAAGAAGCCTGAGAAGCAAAAAATAATTGACTGGTCTGCAGCACAGCATGAAGAATTACAA
CTGCATGCAATTGCCACTTTGTCATCAGTGGCTCCTTTATTAATAGAAGAATACATGTCATGCCAGGGAA
ATGCTCGAGTCCTTGCATTTCTAGAATGGTGTGAGAGTGAAGATCCGTTTTTCAGTCATGGTAACAGTTT
TCATGGTACAGGTGGCCGAGGCAACAAGTTTGCCCAGATGCGTTACAGTTTAAGACTCCTGAGAGCCGTG
GTCTACCTTGAAGATGAGACTGTAAACAAAGATCTTTGTGAAAAGGGAACAATTCAGCAAATGATAGGAA
TCTTTAAAAATATAATAAGCAAGCCTAATGAAAAGGAAGAAGCCATTGTTTTGGAAATCCAGTCTGATAT
ATTACTTATCCTATCTGGCCTTTGTGAGAATCACATTCAAAGGAAGGAAATTTTCGGAACTGAAGGAGTA
GATATCGTTCTTCATGTGATGAAAACAGACCCCAGGAAGTTACAGAGTGGCTTAGGCTATAATGTACTTC
TTTTTAGTACATTGGACAGCATTTGGTGCTGTATTTTGGGATGTTATCCCTCAGAGGATTATTTTCTTGA
AAAGGAAGGCATTTTTCTCCTTTTGGATTTGTTAGCATTGAACCAAAAAAAATTCTGTAATCTAATACTT
GGAATAATGGTTGAATTTTGTGATAATCCCAAAACTGCAGCTCATGTCAATGCTTGGCAAGGGAAGAAGG
ATCAGACAGCTGCTAGTCTTTTAATTAAATTGTGGAGAAAGGAGGAAAAAGAACTAGGAGTAAAACGTGA
TAAAAATGGGAAGATCATTGATACAAAAAAACCTCTATTTACTAGCTTTCAAGAAGAGCAAAAAATCATC
CCACTGCCTGCTAACTGCCCATCTATTGCGGTTATGGATGTTTCTGAGAATATTAGAGCAAAAATTTATG
CTATATTGGGCAAACTAGATTTTGAAAATTTACCTGGCCTATCTGCTGAAGATTTTGTCACCCTTTGTAT
CATACATAGATATCTTGATTTTAAAATTGGAGAAATATGGAATGAAATATATGAAGAAATAAAATTAGAA
AAATTAAGACCAGTCACTACAGATAAAAAAGCTTTGGAAGCTATTACAACAGCATCAGAAAATATTGGAA
AGATGGTTGCTTCTCTGCAAAGTGATATAATTGAAAGCCAAGCATGCCAAGACATGCAAAATGAACAAAA
AGTATATGCAAAAATACAGGCCACGCACAAGCAAAGAGAGCTGGCTAATAAATCATGGGAAGATTTCTTG
GCTAGAACATCAAACGCTAAAACGTTAAAGAAAGCAAAAAGCCTTCAAGAAAAAGCTATAGAAGCCTCCA
GATACCATAAACGACCACAAAATGCAATATTTCACCAAACACATATTAAAGGCCTTAACACAACGGTGCC
CTCTGGTGGAGTAGTAACAGTGGAAAGCACTCCTGCCCGATTAGTAGGAGGACCTCTGGTTGATACGGAT
ATTGCTCTTAAAAAACTGCCCATTCGAGGAGGAGCCTTGCAGAGGGTGAAAGCAGTTAAAATTGTGGATG
CACCAAAAAAGAGTATTCCTACGTAA

Translation (941 aa):
MWTEEAGATAEAQESGIRNKSSSSSQIPVVGVVTEDDEAQDVFKPMDLNRVIKLLEETDKDGLEEKQLKF
VKKLVQCYQNGLPLRDLAQIFKILNLCSGKIKNQPRFIESAYDIIKLCGLPFLKKKVSDEITYAEDTANS
IALLGDLMKIPSSELRIQICKCIVDFYHAEPPKKHIPGYQQASSSYKIQMAEVGGLAKTMVQSMTLLENQ
LVEKLWVLKVLQHLSTSEVNCTIMMKAQAASGICTHLNDPDPSGQLLFRSSEILWNLLEKSSKEEVIQQL
SNLECLLALKEVFKNLFMRGFSHYDRQLRNDILVITTIIAQNPEAPMIECGFTKDLILFATFNEVKSQNL
LVKGLKLSNSYEDFELKKLLFNVIVILCKDLPTVQLLIDGKVILALFTYVKKPEKQKIIDWSAAQHEELQ
LHAIATLSSVAPLLIEEYMSCQGNARVLAFLEWCESEDPFFSHGNSFHGTGGRGNKFAQMRYSLRLLRAV
VYLEDETVNKDLCEKGTIQQMIGIFKNIISKPNEKEEAIVLEIQSDILLILSGLCENHIQRKEIFGTEGV
DIVLHVMKTDPRKLQSGLGYNVLLFSTLDSIWCCILGCYPSEDYFLEKEGIFLLLDLLALNQKKFCNLIL
GIMVEFCDNPKTAAHVNAWQGKKDQTAASLLIKLWRKEEKELGVKRDKNGKIIDTKKPLFTSFQEEQKII
PLPANCPSIAVMDVSENIRAKIYAILGKLDFENLPGLSAEDFVTLCIIHRYLDFKIGEIWNEIYEEIKLE
KLRPVTTDKKALEAITTASENIGKMVASLQSDIIESQACQDMQNEQKVYAKIQATHKQRELANKSWEDFL
ARTSNAKTLKKAKSLQEKAIEASRYHKRPQNAIFHQTHIKGLNTTVPSGGVVTVESTPARLVGGPLVDTD
IALKKLPIRGGALQRVKAVKIVDAPKKSIPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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