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Report for CCDS43474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43474.1 Public Homo sapiens 6 HMGCLL1 24 110 108 CCDS HistoryNCBI Gene:54511Re-query CCDS DB by CCDS ID:43474.1Re-query CCDS DB by GeneID:54511See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43474.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274901.9 ENSP00000274901.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274901.9Link to Ensembl Protein Viewer:ENSP00000274901.4Re-query CCDS DB by Nucleotide ID:ENST00000274901Re-query CCDS DB by Protein ID:ENSP00000274901
Original member Current member NCBI NM_001042406.2 NP_001035865.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042406.2Link to Protein Sequence:NP_001035865.1Re-query CCDS DB by Nucleotide ID:NM_001042406Re-query CCDS DB by Protein ID:NP_001035865Link to BLAST:NP_001035865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035865.1 340 Q8TB92-2 340 100% 0 0

Chromosomal Locations for CCDS 43474.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55435662 55435763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55439434 55439559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55495419 55495607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55499236 55499299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55514048 55514196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55516508 55516603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55541729 55541836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55542060 55542140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55578948 55579055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGGGAATGTGCCATCCGCGGTGAAGCACTGCCTCAGCTACCAGCAGCTTCTCCGGGAGCATCTCTGGA
TCGGGGATTCAGTGGCAGGGGCGCTCGACCCCGCGCAGGAAACATCCCAGTTATCTGGACTCCCTGAGTT
TGTTAAAATAGTAGAAGTTGGGCCTAGGGATGGATTGCAGAATGAAAAGGTTATAGTTCCTACAGATATA
AAAATTGAATTTATCAATCGACTTTCCCAAACTGGCTTGTCTGTAATAGAAGTGACTAGCTTTGTGTCTT
CCAGATGGGTACCACAGATGGCTGATCACACTGAAGTAATGAAAGGCATTCATCAATATCCAGGAGTTCG
CTATCCTGTCCTTACTCCTAATCTTCAGGGTTTTCACCATGCTGTTGCTGCTGGAGCTACTGAGATATCA
GTTTTTGGAGCTGCATCTGAATCCTTTAGCAAGAAGAATATTAACTGTTCCATTGAAGAAAGTATGGGAA
AATTTGAGGAGGTTGTTAAGTCTGCAAGACACATGAATATTCCAGCACGAGGGTATGTGTCTTGTGCTCT
GGGCTGTCCATATGAAGGAAGTATTACACCGCAAAAAGTGACAGAAGTGTCTAAGAGATTGTACGGCATG
GGTTGTTATGAGATCTCTCTAGGAGACACAATTGGAGTGGGAACTCCAGGAAGTATGAAAAGAATGTTGG
AAAGTGTGATGAAAGAAATCCCACCAGGTGCTCTTGCTGTTCACTGTCATGACACATACGGACAAGCCTT
AGCAAATATCCTTACGGCCCTTCAGATGGGAATTAATGTGGTGGACTCCGCAGTATCCGGATTAGGTGGC
TGCCCTTATGCAAAAGGTGCTTCTGGGAATGTAGCCACTGAGGATTTGATATATATGCTTAATGGCCTGG
GGCTCAATACAGGTGTGAATCTATACAAAGTGATGGAAGCTGGTGACTTTATTTGCAAAGCTGTGAATAA
AACCACAAACTCTAAAGTAGCACAAGCCTCCTTCAATGCTTGA

Translation (340 aa):
MGNVPSAVKHCLSYQQLLREHLWIGDSVAGALDPAQETSQLSGLPEFVKIVEVGPRDGLQNEKVIVPTDI
KIEFINRLSQTGLSVIEVTSFVSSRWVPQMADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEIS
VFGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGM
GCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG
CPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQASFNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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