NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43432.1 Public Homo sapiens 6 GPX6 24 110 108 CCDS HistoryNCBI Gene:257202Re-query CCDS DB by CCDS ID:43432.1Re-query CCDS DB by GeneID:257202See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 43432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361902.5 ENSP00000354581.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361902.5Link to Ensembl Protein Viewer:ENSP00000354581.1Re-query CCDS DB by Nucleotide ID:ENST00000361902Re-query CCDS DB by Protein ID:ENSP00000354581
Original member Current member NCBI NM_182701.1 NP_874360.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182701.1Link to Protein Sequence:NP_874360.1Re-query CCDS DB by Nucleotide ID:NM_182701Re-query CCDS DB by Protein ID:NP_874360Link to BLAST:NP_874360.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874360.1 221 P59796 221 100% 0 0

Chromosomal Locations for CCDS 43432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28504292 28504498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28505703 28505802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28506312 28506429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28510751 28510904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28515657 28515743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 73

Nucleotide Sequence (666 nt):
ATGTTCCAGCAGTTCCAGGCCTCCTGTCTTGTCCTGTTTTTCCTGGTTGGCTTTGCTCAGCAGACCCTAA
AGCCTCAAAATAGGAAGGTGGATTGCAACAAAGGGGTAACAGGCACCATCTATGAGTATGGAGCCCTCAC
CCTCAACGGCGAGGAGTACATCCAATTCAAGCAGTTTGCAGGCAAGCACGTCCTGTTTGTCAATGTGGCC
GCCTATTGAGGCTTGGCAGCTCAGTATCCTGAACTGAATGCACTACAGGAGGAGCTGAAGAATTTTGGTG
TCATTGTGTTGGCCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGAACAAACTCAGAAATACTTCT
TGGTCTCAAGTATGTGTGTCCAGGTAGTGGCTTTGTCCCCAGTTTCCAGCTCTTTGAGAAAGGGGATGTG
AATGGAGAAAAAGAACAGAAGGTCTTTACTTTCCTGAAGAACTCCTGCCCTCCGACCTCTGATCTTTTGG
GCTCATCAAGCCAACTCTTCTGGGAGCCCATGAAGGTCCATGATATCCGCTGGAACTTTGAGAAATTTCT
GGTGGGGCCCGATGGAGTCCCTGTCATGCATTGGTTCCACCAGGCTCCAGTCAGCACAGTCAAGTCAGAC
ATCCTGGAGTACCTAAAGCAGTTCAATACCCACTAG

Translation (221 aa):
MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVA
AYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDV
NGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSD
ILEYLKQFNTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH