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Report for CCDS4340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4340.1 Public Homo sapiens 5 SOX30 24 110 108 CCDS HistoryNCBI Gene:11063Re-query CCDS DB by CCDS ID:4340.1Re-query CCDS DB by GeneID:11063See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311371.9 ENSP00000309343.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311371.9Link to Ensembl Protein Viewer:ENSP00000309343.5Re-query CCDS DB by Nucleotide ID:ENST00000311371Re-query CCDS DB by Protein ID:ENSP00000309343
Original member Current member NCBI NM_007017.3 NP_008948.1 Accepted alive Link to Nucleotide Sequence:NM_007017.3Link to Protein Sequence:NP_008948.1Re-query CCDS DB by Nucleotide ID:NM_007017Re-query CCDS DB by Protein ID:NP_008948Link to BLAST:NP_008948.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008948.1 501 O94993-2 501 100% 0 0

Chromosomal Locations for CCDS 4340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157626603 157626721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157646637 157646816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157648657 157648896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157651112 157652078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGAGAGAGCCAGACCCGAGCCGCCGCCTCAGCCGCGCCCGTTGCGTCCCGCTCCGCCCCCGCTGCCGG
TCGAGGGCACCTCCTTTTGGGCAGCAGCCATGGAGCCCCCTCCGTCGTCTCCCACACTGAGCGCGGCAGC
CAGTGCGACCTTGGCCTCGTCGTGCGGGGAGGCAGTGGCGTCCGGCTTACAGCCCGCGGTGCGGCGGCTG
CTGCAGGTGAAGCCAGAGCAGGTGTTGCTGCTACCACAGCCTCAGGCCCAGAACGAGGAAGCCGCTGCCT
CGTCCGCGCAGGCGCGGCTGTTGCAGTTCAGGCCCGACCTGCGGCTCCTGCAGCCGCCGACAGCGTCAGA
CGGCGCCACCTCCAGGCCCGAGTTGCACCCGGTGCAGCCCCTGGCGCTGCATGTCAAGGCCAAGAAGCAG
AAGCTGGGGCCCAGCCTGGATCAGTCAGTGGGGCCTCGAGGGGCCGTCGAAACCGGTCCTAGAGCCTCCA
GGGTGGTCAAGTTGGAAGGCCCCGGGCCGGCCCTCGGCTACTTCCGAGGGGACGAGAAGGGCAAGCTGGA
GGCGGAGGAGGTCATGAGAGACTCGATGCAAGGCGGGGCAGGCAAAAGCCCGGCAGCCATCCGAGAAGGT
GTGATCAAAACGGAGGAACCCGAGAGACTCCTCGAGGACTGCAGGCTCGGCGCGGAGCCCGCGTCCAATG
GCCTGGTTCATGGCAGCGCGGAGGTCATCTTGGCCCCAACGTCCGGTGCCTTTGGGCCGCACCAGCAAGA
CCTTAGGATCCCTTTGACGCTCCACACGGTCCCCCCTGGGGCCCGGATCCAGTTTCAGGGAGCTCCGCCT
TCAGAGCTGATAAGATTGACCAAGGTCCCCCTGACACCAGTGCCTACTAAAATGCAGTCCCTACTGGAGC
CTTCTGTAAAAATTGAAACCAAAGATGTCCCGCTCACCGTGTTGCCCTCAGATGCAGGCATACCAGATAC
TCCCTTCAGTAAGGACAGAAATGGTCATGTGAAGCGACCCATGAACGCATTTATGGTTTGGGCAAGGATC
CACCGACCAGCACTAGCCAAAGCTAACCCAGCAGCCAACAATGCAGAAATCAGTGTCCAGCTTGGGTTAG
AGTGGAACAAACTTAGTGAAGAACAAAAGAAACCCTATTACGATGAAGCACAAAAGATTAAGGAAAAGCA
CAGAGAGGAATTTCCTGGTTGGGTTTATCAGCCTCGTCCAGGGAAGCGAAAACGATTCCCTCTAAGTGTT
TCCAATGTATTTTCTGGTACCACACAGAATATCATCTCTACAAATCCTACAACAGTTTATCCTTACCGCT
CACCTACGTACTCTGTGGTAATTCCCAGCCTACAGAATCCCATCACTCATCCAGTTGTACATGCCCTTAC
AGTCGGCCTCCCTTTGGCTATGGAAATTTTCCGAGTTCAATGCCAGAATGCCTTAGTTATTATGAAGACA
GGTACCCAAAACATGAGGGTATCTTTTCAACTTTAA

Translation (501 aa):
MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVASGLQPAVRRL
LQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGATSRPELHPVQPLALHVKAKKQ
KLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRGDEKGKLEAEEVMRDSMQGGAGKSPAAIREG
VIKTEEPERLLEDCRLGAEPASNGLVHGSAEVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPP
SELIRLTKVPLTPVPTKMQSLLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARI
HRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVVHALTVGLPLAMEIFRVQCQNALVIMKT
GTQNMRVSFQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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