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Report for CCDS43357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43357.1 Public Homo sapiens 5 ISOC1 24 110 108 CCDS HistoryNCBI Gene:51015Re-query CCDS DB by CCDS ID:43357.1Re-query CCDS DB by GeneID:51015See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000173527.6 ENSP00000173527.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000173527.6Link to Ensembl Protein Viewer:ENSP00000173527.5Re-query CCDS DB by Nucleotide ID:ENST00000173527Re-query CCDS DB by Protein ID:ENSP00000173527
Original member Current member NCBI NM_016048.2 NP_057132.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016048.2Link to Protein Sequence:NP_057132.2Re-query CCDS DB by Nucleotide ID:NM_016048Re-query CCDS DB by Protein ID:NP_057132Link to BLAST:NP_057132.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057132.2 298 Q96CN7 298 100% 0 0

Chromosomal Locations for CCDS 43357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129094767 129095075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129104956 129105075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129105185 129105388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129106946 129107062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129112855 129113001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCGGCTGCGGAGCCGGCGGTCCTTGCGCTCCCCAACAGCGGCGCCGGGGGCGCGGGGGCGCCGTCGG
GCACAGTCCCGGTGCTCTTCTGTTTCTCAGTCTTCGCGCGACCCTCGTCGGTGCCACACGGGGCGGGCTA
CGAGCTGCTCATCCAGAAGTTCCTCAGCCTGTACGGCGACCAGATCGACATGCACCGCAAATTCGTGGTG
CAGCTGTTCGCCGAGGAGTGGGGCCAGTACGTGGACTTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCA
AGGTGCGCCTCGTGCCGTTGCAGATCCAGCTCACTACCCTGGGAAATCTTACACCTTCAAGCACTGTGTT
TTTCTGCTGTGATATGCAGGAAAGGTTCAGACCAGCCATCAAGTATTTTGGGGATATTATTAGCGTGGGA
CAGAGATTGTTGCAAGGGGCCCGGATTTTAGGAATTCCTGTTATTGTAACAGAACAATACCCTAAAGGTC
TTGGGAGCACGGTTCAAGAAATTGATTTAACAGGTGTAAAACTGGTACTTCCAAAGACCAAGTTTTCAAT
GGTATTACCAGAAGTAGAAGCGGCATTAGCAGAGATTCCCGGAGTCAGGAGTGTTGTATTATTTGGAGTA
GAAACTCATGTGTGCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGAGTCGAGGTTCACATTGTTG
CTGATGCCACCTCATCAAGAAGCATGATGGACAGGATGTTTGCCCTCGAGCGTCTCGCTCGAACCGGGAT
CATAGTGACCACGAGTGAGGCTGTTCTGCTTCAGCTGGTAGCTGATAAGGACCATCCAAAATTCAAGGAA
ATTCAGAATCTAATTAAGGCGAGTGCTCCAGAGTCGGGTCTGCTTTCCAAAGTATAG

Translation (298 aa):
MAAAEPAVLALPNSGAGGAGAPSGTVPVLFCFSVFARPSSVPHGAGYELLIQKFLSLYGDQIDMHRKFVV
QLFAEEWGQYVDLPKGFAVSERCKVRLVPLQIQLTTLGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVG
QRLLQGARILGIPVIVTEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGV
ETHVCIQQTALELVGRGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKE
IQNLIKASAPESGLLSKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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